6G0A Dna Binding Protein date Mar 16, 2018
title The Crystal Structure Of The Pol2 Catalytic Domain Of Dna Po Epsilon Carrying A P301r Substitution.
authors V.Parkash, E.Johansson
compound source
Molecule: Dna Polymerase Epsilon Catalytic Subunit A
Chain: A
Synonym: Dna Polymerase II Subunit A
Ec: 2.7.7.7
Engineered: Yes
Mutation: Yes
 Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_taxid: 559292
Gene: Pol2, Dun2, Ynl262w, N0825
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008

Molecule: Dna (5'-D(Ptpapapcpcpgpcpgptptpdc)-3')
Chain: P
Engineered: Yes
Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: Dna (5'-D(Ptpcptptpgpapapcpgpcpgpgpt 3');
Chain: T
Engineered: Yes
Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
symmetry Space Group: C 1 2 1
R_factor 0.224 R_Free 0.265
crystal
cell
length a length b length c angle alpha angle beta angle gamma
159.895 67.252 151.639 90.00 111.50 90.00
method X-Ray Diffractionresolution 2.62 Å
ligand CA, DOC, DTP, FE enzyme Transferase E.C.2.7.7.7 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (191 Kb) [Save to disk]
  • Biological Unit Coordinates (6g0a.pdb1.gz) 184 Kb
  • LPC: Ligand-Protein Contacts for 6G0A
  • CSU: Contacts of Structural Units for 6G0A
  • Structure Factors (1876 Kb)
  • Retrieve 6G0A in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6G0A from S2C, [Save to disk]
    • View 6G0A in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6G0A
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6g0a_P] [6g0a_T] [6g0a_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6G0A
  • Community annotation for 6G0A at PDBWiki (http://pdbwiki.org)

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