6G8R Peptide Binding Protein date Apr 09, 2018
title Sp140 Phd-Bromodomain Complex With Scfv
authors M.Fairhead, S.Graslund, C.Strain-Damerell, S.S.Picaud, A.C.W.Pik D.M.Pinkas, E.Wigren, C.Preger, H.Persson Lotsholm, E.Ossipova, P.Filippakopoulos, N.A.Burgess-Brown, C.H.Arrowsmith, A.M.Edwa C.Bountra, F.Von Delft, Structural Genomics Consortium (Sgc)
compound source
Molecule: Single-Chain Variable Fragment
Chain: A
Engineered: Yes
Other_details: Missing Density For Linker Region
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Nuclear Body Protein Sp140
Chain: B
Fragment: Unp Residues 687-862
Synonym: Lymphoid-Restricted Homolog Of Sp100,Lysp100,Nucle Autoantigen Sp-140,Speckled 140 Kda;
Engineered: Yes
Other_details: Zinc Atoms Numbered 1000 And 1001
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Sp140, Lysp100
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 61 2 2
R_factor 0.215 R_Free 0.249
crystal
cell
length a length b length c angle alpha angle beta angle gamma
89.200 89.200 343.350 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.74 Å
ligand EDO, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (132 Kb) [Save to disk]
  • Biological Unit Coordinates (6g8r.pdb1.gz) 126 Kb
  • LPC: Ligand-Protein Contacts for 6G8R
  • CSU: Contacts of Structural Units for 6G8R
  • Structure Factors (791 Kb)
  • Retrieve 6G8R in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6G8R from S2C, [Save to disk]
    • View 6G8R in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6G8R
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6g8r_A] [6g8r_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6G8R
  • Community annotation for 6G8R at PDBWiki (http://pdbwiki.org)

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