6G9M Signaling Protein date Apr 11, 2018
title Fragment-Based Discovery Of A Highly Potent, Orally Bioavail Inhibitor Which Modulates The Phosphorylation And Catalytic Of Erk12
authors M.O'Reilly
compound source
Molecule: Mitogen-Activated Protein Kinase 1
Chain: A
Synonym: Mapk 1,Ert1,Extracellular Signal-Regulated Kinase Map Kinase Isoform P42,P42-Mapk,Mitogen-Activated Protein K Mapk 2;
Ec: 2.7.11.24
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Mapk1, Erk2, Prkm1, Prkm2
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
symmetry Space Group: P 1 21 1
R_factor 0.157 R_Free 0.206
crystal
cell
length a length b length c angle alpha angle beta angle gamma
48.808 70.843 60.375 90.00 109.65 90.00
method X-Ray Diffractionresolution 1.86 Å
ligand CME, ESW, SO4 enzyme Transferase E.C.2.7.11.24 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A
  • chemical synaptic transmissi...

  • Primary referenceFragment-based discovery of a potent, orally bioavailable inhibitor which modulates the phosphorylation and catalytic activity of ERK1/2., Heightman TD, Berdini V, Braithwaite H, Buck IM, Cassidy M, Castro J, Courtin A, Day JEH, East C, Fazal L, Graham B, Griffiths-Jones CM, Lyons JF, Martins V, Muench S, Munck JM, Norton D, O'Reilly M, Palmer N, Pathuri P, Reader M, Rees DC, Rich SJ, Richardson C, Saini H, Thompson NT, Wallis NG, Walton H, Wilsher NE, Woolford AJ, Cooke M, Cousin D, Onions S, Shannon J, Watts J, Murray CW, J Med Chem. 2018 May 18. doi: 10.1021/acs.jmedchem.8b00421. PMID:29775310
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (134 Kb) [Save to disk]
  • Biological Unit Coordinates (6g9m.pdb1.gz) 129 Kb
  • LPC: Ligand-Protein Contacts for 6G9M
  • CSU: Contacts of Structural Units for 6G9M
  • Structure Factors (501 Kb)
  • Retrieve 6G9M in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6G9M from S2C, [Save to disk]
  • View 6G9M in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6G9M
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6g9m_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6G9M
  • Community annotation for 6G9M at PDBWiki (http://pdbwiki.org)

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