6GAP Viral Protein date Apr 11, 2018
title Crystal Structure Of The T3d Reovirus Sigma1 Coiled Coil Tai
authors M.H.Dietrich, T.Stehle
compound source
Molecule: Outer Capsid Protein Sigma-1
Chain: A, B, C
Synonym: Sigma1,Cell Attachment Protein,Hemagglutinin
Engineered: Yes
 Organism_scientific: Mammalian Orthoreovirus 3 Dearing
Organism_taxid: 10886
Gene: S1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 1 2 1
R_factor 0.208 R_Free 0.249
crystal
cell
length a length b length c angle alpha angle beta angle gamma
350.710 41.530 63.320 90.00 94.98 90.00
method X-Ray Diffractionresolution 2.15 Å
Primary referenceStructural and Functional Features of the Reovirus sigma1 Tail., Dietrich MH, Ogden KM, Long JM, Ebenhoch R, Thor A, Dermody TS, Stehle T, J Virol. 2018 Apr 25. pii: JVI.00336-18. doi: 10.1128/JVI.00336-18. PMID:29695426
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (109 Kb) [Save to disk]
  • Biological Unit Coordinates (6gap.pdb1.gz) 104 Kb
  • CSU: Contacts of Structural Units for 6GAP
  • Structure Factors (429 Kb)
  • Retrieve 6GAP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6GAP from S2C, [Save to disk]
    • View 6GAP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6GAP
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6gap_C] [6gap_A] [6gap_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6GAP
  • Community annotation for 6GAP at PDBWiki (http://pdbwiki.org)

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