6GBL Hydrolase date Apr 15, 2018
title Repertoires Of Functionally Diverse Enzymes Through Computat Design At Epistatic Active-Site Positions
authors O.Khersonsky, R.Lipsh, Z.Avizemer, M.Goldsmith, Y.Ashani, H.Leade S.Rogotner, D.Trudeau, D.S.Tawfik, S.J.Fleishman
compound source
Molecule: Parathion Hydrolase
Chain: A, B
Synonym: Phosphotriesterase,Pte
Ec: 3.1.8.1
Engineered: Yes
 Organism_scientific: Brevundimonas Diminuta
Organism_common: Pseudomonas Diminuta
Organism_taxid: 293
Gene: Opd
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 1 2 1
R_factor 0.177 R_Free 0.220
crystal
cell
length a length b length c angle alpha angle beta angle gamma
155.797 53.560 89.339 90.00 107.21 90.00
method X-Ray Diffractionresolution 1.95 Å
ligand CAC, EDO, FMT, ZN enzyme Hydrolase E.C.3.1.8.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • aryldialkylphosphatase activ...


    • Primary referenceAutomated Design of Efficient and Functionally Diverse Enzyme Repertoires., Khersonsky O, Lipsh R, Avizemer Z, Ashani Y, Goldsmith M, Leader H, Dym O, Rogotner S, Trudeau DL, Prilusky J, Amengual-Rigo P, Guallar V, Tawfik DS, Fleishman SJ, Mol Cell. 2018 Oct 4;72(1):178-186.e5. doi: 10.1016/j.molcel.2018.08.033. Epub, 2018 Sep 27. PMID:30270109
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (112 Kb) [Save to disk]
  • Biological Unit Coordinates (6gbl.pdb1.gz) 106 Kb
  • LPC: Ligand-Protein Contacts for 6GBL
  • CSU: Contacts of Structural Units for 6GBL
  • Structure Factors (2163 Kb)
  • Retrieve 6GBL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6GBL from S2C, [Save to disk]
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  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6gbl from FSSP and Dali (Families of Structurally Similar Proteins)
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6gbl_A] [6gbl_B]
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  • Community annotation for 6GBL at PDBWiki (http://pdbwiki.org)

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