6GBL Repertoires of functionally diverse enzymes through computational design at epistatic active-site positions date
authors Khersonsky, O., Lipsh, R., Avizemer, Z., Goldsmith, M., Ashani, Y., Leader, H., Dym, O., Rogotner, S., Trudeau, D., Tawfik, D.S., Fleishman, S.J.
compound source
symmetry
R_factor
R_Free 0.21957
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.95
ligand CAC, EDO, FMT, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • aryldialkylphosphatase activ...


    • Primary referenceAutomated Design of Efficient and Functionally Diverse Enzyme Repertoires., Khersonsky O, Lipsh R, Avizemer Z, Ashani Y, Goldsmith M, Leader H, Dym O, Rogotner S, Trudeau DL, Prilusky J, Amengual-Rigo P, Guallar V, Tawfik DS, Fleishman SJ, Mol Cell. 2018 Oct 4;72(1):178-186.e5. doi: 10.1016/j.molcel.2018.08.033. Epub, 2018 Sep 27. PMID:30270109
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (112 Kb) [Save to disk]
  • Biological Unit Coordinates (6gbl.pdb1.gz) 106 Kb
  • LPC: Ligand-Protein Contacts for 6GBL
  • CSU: Contacts of Structural Units for 6GBL
  • Structure Factors (2163 Kb)
  • Retrieve 6GBL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6GBL from S2C, [Save to disk]
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  • Proteopedia, because life has more than 2D.
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    • Visual 3D analysis of 6GBL
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6gbl from FSSP and Dali (Families of Structurally Similar Proteins)
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6gbl_A] [6gbl_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6GBL
  • Community annotation for 6GBL at PDBWiki (http://pdbwiki.org)

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