6GE3 Transcription date Apr 25, 2018
title X-Ray Structure Of Tead4 (Wildtype) Complexed With Yap (Wild Role Of Residual Flexibility And Water Molecules In The Ada A Bound Intrinsically Disordered Protein To Mutations At A Interface
authors J.Kallen
compound source
Molecule: Transcriptional Enhancer Factor Tef-3
Chain: A
Fragment: C-Terminal Domain, Yap Binding Domain
Synonym: Tea Domain Family Member 4,Tead-4,Transcription Fa Like 1,Transcription Factor Rtef-1;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Tead4, Rtef1, Tcf13l1, Tef3
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28-Derived Vector

Molecule: Transcriptional Coactivator Yap1
Chain: L
Synonym: Yes-Associated Protein 1,Protein Yorkie Homolog,Ye Associated Protein Yap65 Homolog

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 41 21 2
R_factor 0.218 R_Free 0.242
length a length b length c angle alpha angle beta angle gamma
59.149 59.149 158.999 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.85 Å
Primary referenceAdaptation of the bound intrinsically disordered protein YAP to mutations at the YAP:TEAD interface., Mesrouze Y, Bokhovchuk F, Izaac A, Meyerhofer M, Zimmermann C, Fontana P, Schmelzle T, Erdmann D, Furet P, Kallen J, Chene P, Protein Sci. 2018 Jul 29. doi: 10.1002/pro.3493. PMID:30058229
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (51 Kb) [Save to disk]
  • Biological Unit Coordinates (6ge3.pdb1.gz) 46 Kb
  • CSU: Contacts of Structural Units for 6GE3
  • Structure Factors (673 Kb)
  • Retrieve 6GE3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6GE3 from S2C, [Save to disk]
  • View 6GE3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6GE3
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6ge3 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6ge3_A] [6ge3_L]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6GE3
  • Community annotation for 6GE3 at PDBWiki (http://pdbwiki.org)

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