6GE5 Transcription date Apr 25, 2018
title Tead4 (216-434);Y429f Complexed With Yap Peptide (60-100) An Myristoate (Covalently Bound) At 2.05a (P41212 Crystal Form Myristoylation Was Done By Adding Myr-Coa
authors J.Kallen
compound source
Molecule: Transcriptional Enhancer Factor Tef-3
Chain: A
Fragment: C-Terminal Domain, Yap Binding Domain
Synonym: Tea Domain Family Member 4,Tead-4,Transcription Fa Like 1,Transcription Factor Rtef-1;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Tead4, Rtef1, Tcf13l1, Tef3
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28-Derived Vector

Molecule: Transcriptional Coactivator Yap1
Chain: L
Synonym: Yes-Associated Protein 1,Protein Yorkie Homolog,Ye Associated Protein Yap65 Homolog

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 41 21 2
R_factor 0.223 R_Free 0.238
length a length b length c angle alpha angle beta angle gamma
58.952 58.952 159.756 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.05 Å
Primary referenceAdaptation of the bound intrinsically disordered protein YAP to mutations at the YAP:TEAD interface., Mesrouze Y, Bokhovchuk F, Izaac A, Meyerhofer M, Zimmermann C, Fontana P, Schmelzle T, Erdmann D, Furet P, Kallen J, Chene P, Protein Sci. 2018 Jul 29. doi: 10.1002/pro.3493. PMID:30058229
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (51 Kb) [Save to disk]
  • Biological Unit Coordinates (6ge5.pdb1.gz) 47 Kb
  • CSU: Contacts of Structural Units for 6GE5
  • Structure Factors (502 Kb)
  • Retrieve 6GE5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6GE5 from S2C, [Save to disk]
  • View 6GE5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6GE5
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6ge5 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6ge5_L] [6ge5_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6GE5
  • Community annotation for 6GE5 at PDBWiki (http://pdbwiki.org)

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