6GHD Protein Binding date May 07, 2018
title Structural Analysis Of The Ternary Complex Between Lamin Ac Emerin Identifies An Interface Disrupted In Autosomal Reces Progeroid Diseases
authors C.Samson, A.Petitalot, F.Celli, I.Herrada, V.Ropars, M.H.Ledu, N.N A.A.Arteni, B.Buendia, S.Zinnjustin
compound source
Molecule: Emerin
Chain: G, H
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Emd, Edmd, Sta
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Barrier-To-Autointegration Factor
Chain: D, E, A, C
Synonym: Breakpoint Cluster Region Protein 1
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Banf1, Baf, Bcrg1
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Prelamin-Ac
Chain: B, F
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Lmna, Lmn1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1
R_factor 0.192 R_Free 0.247
crystal
cell
length a length b length c angle alpha angle beta angle gamma
57.770 62.750 64.340 66.44 66.55 88.05
method X-Ray Diffractionresolution 2.10 Å
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, E


H, G


Primary referenceStructural analysis of the ternary complex between lamin A/C, BAF and emerin identifies an interface disrupted in autosomal recessive progeroid diseases., Samson C, Petitalot A, Celli F, Herrada I, Ropars V, Le Du MH, Nhiri N, Jacquet E, Arteni AA, Buendia B, Zinn-Justin S, Nucleic Acids Res. 2018 Nov 2;46(19):10460-10473. doi: 10.1093/nar/gky736. PMID:30137533
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (237 Kb) [Save to disk]
  • Biological Unit Coordinates (6ghd.pdb1.gz) 117 Kb
  • Biological Unit Coordinates (6ghd.pdb2.gz) 116 Kb
  • CSU: Contacts of Structural Units for 6GHD
  • Structure Factors (1159 Kb)
  • Retrieve 6GHD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6GHD from S2C, [Save to disk]
  • View 6GHD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6GHD
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6ghd from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6ghd_F] [6ghd_A] [6ghd_D] [6ghd_C] [6ghd_H] [6ghd_B] [6ghd_G] [6ghd_E]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6GHD
  • Community annotation for 6GHD at PDBWiki (http://pdbwiki.org)

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