6GKB Metal Binding Protein date May 18, 2018
title Iron Soak Structure Of Y40f Synftn
authors A.M.Hemmings, J.M.Bradley
compound source
Molecule: Ferritin
Chain: A
Ec: 1.16.3.2
Engineered: Yes
 Organism_scientific: Synechococcus Sp. (Strain Cc9311)
Organism_taxid: 64471
Strain: Cc9311
Gene: Sync_1539
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
symmetry Space Group: F 4 3 2
R_factor 0.167 R_Free 0.210
crystal
cell
length a length b length c angle alpha angle beta angle gamma
176.679 176.679 176.679 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand FE enzyme Oxidoreductase E.C.1.16.3.2 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceReaction of O2 with a diiron protein generates a mixed-valent Fe(2+)/Fe(3+) center and peroxide., Bradley JM, Svistunenko DA, Pullin J, Hill N, Stuart RK, Palenik B, Wilson MT, Hemmings AM, Moore GR, Le Brun NE, Proc Natl Acad Sci U S A. 2019 Jan 18. pii: 1809913116. doi:, 10.1073/pnas.1809913116. PMID:30659147
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (69 Kb) [Save to disk]
  • Biological Unit Coordinates (6gkb.pdb1.gz) 1487 Kb
  • LPC: Ligand-Protein Contacts for 6GKB
  • CSU: Contacts of Structural Units for 6GKB
  • Structure Factors (766 Kb)
  • Retrieve 6GKB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6GKB from S2C, [Save to disk]
    • View 6GKB in 3D
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    • Visual 3D analysis of 6GKB
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6gkb_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6GKB
  • Community annotation for 6GKB at PDBWiki (http://pdbwiki.org)

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