6GL8 Apoptosis date May 23, 2018
title Crystal Structure Of Bcl-2 In Complex With The Novel Orally Inhibitor S55746
authors P.Casara, J.Davidson, A.Claperon, G.Le Toumelin-Braizat, M.Vogle A.Bruno, M.Chanrion, G.Lysiak-Auvity, T.Le Diguarher, J.B.Starc N.Whitehead, C.Graham, N.Matassova, P.Dokurno, C.Pedder, Y.Wang, A.M.Girard, E.Schneider, F.Grave, A.Studeny, G.Guasconi, F.Rocch S.Maiga, J.M.Henlin, F.Colland, L.Kraus-Berthier, S.Le Gouill, M.J.S.Dyer, R.Hubbard, M.Wood, M.Amiot, G.M.Cohen, J.A.Hickman, E J.Murray, O.Geneste
compound source
Molecule: Apoptosis Regulator Bcl-2,Apoptosis Regulator Bcl Apoptosis Regulator Bcl-2,Bcl-2-Like Protein 1,Apoptosis Re Bcl-2,Apoptosis Regulator Bcl-2,Apoptosis Regulator Bcl-2;
Chain: A
Synonym: Bcl2-L-1,Apoptosis Regulator Bcl-X
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Bcl2, Bcl2l1, Bcl2l, Bclx
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_variant: Plyss
symmetry Space Group: P 21 21 21
R_factor 0.178 R_Free 0.194
crystal
cell
length a length b length c angle alpha angle beta angle gamma
35.090 46.900 85.040 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.40 Å
ligand F3Q enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceS55746 is a novel orally active BCL-2 selective and potent inhibitor that impairs hematological tumor growth., Casara P, Davidson J, Claperon A, Le Toumelin-Braizat G, Vogler M, Bruno A, Chanrion M, Lysiak-Auvity G, Le Diguarher T, Starck JB, Chen I, Whitehead N, Graham C, Matassova N, Dokurno P, Pedder C, Wang Y, Qiu S, Girard AM, Schneider E, Grave F, Studeny A, Guasconi G, Rocchetti F, Maiga S, Henlin JM, Colland F, Kraus-Berthier L, Le Gouill S, Dyer MJS, Hubbard R, Wood M, Amiot M, Cohen GM, Hickman JA, Morris E, Murray J, Geneste O, Oncotarget. 2018 Apr 13;9(28):20075-20088. doi: 10.18632/oncotarget.24744., eCollection 2018 Apr 13. PMID:29732004
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (35 Kb) [Save to disk]
  • Biological Unit Coordinates (6gl8.pdb1.gz) 30 Kb
  • LPC: Ligand-Protein Contacts for 6GL8
  • CSU: Contacts of Structural Units for 6GL8
  • Structure Factors (723 Kb)
  • Retrieve 6GL8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6GL8 from S2C, [Save to disk]
  • View 6GL8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6GL8
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6gl8_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6GL8
  • Community annotation for 6GL8 at PDBWiki (http://pdbwiki.org)

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