6GN8 Toxin date May 30, 2018
title Exoenzyme S From Pseudomonas Aeruginosa In Complex With Huma Protein Beta, Trimeric Crystal Form
authors T.Karlberg, A.F.Pinto, P.Hornyak, A.G.Thorsell, K.Nareoja, H.Schu
compound source
Molecule: 14-3-3 Protein Betaalpha
Chain: A, B
Synonym: Protein 1054,Protein Kinase C Inhibitor Protein 1,
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ywhab
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet Duet-1

Molecule: Exoenzyme S
Chain: C
Engineered: Yes
Mutation: Yes

Organism_scientific: Pseudomonas Aeruginosa
Organism_taxid: 287
Gene: Exos
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet Duet-1
symmetry Space Group: C 1 2 1
R_factor 0.200 R_Free 0.248
crystal
cell
length a length b length c angle alpha angle beta angle gamma
159.909 59.401 120.333 90.00 125.79 90.00
method X-Ray Diffractionresolution 2.34 Å
ligand MPD enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • protein kinase inhibitor act...
  • positive regulation of prote...

  • C


    Primary reference14-3-3 proteins activate Pseudomonas exotoxins-S and -T by chaperoning a hydrophobic surface., Karlberg T, Hornyak P, Pinto AF, Milanova S, Ebrahimi M, Lindberg M, Pullen N, Nordstrom A, Loverli E, Caraballo R, Wong EV, Nareoja K, Thorsell AG, Elofsson M, De La Cruz EM, Bjorkegren C, Schuler H, Nat Commun. 2018 Sep 17;9(1):3785. doi: 10.1038/s41467-018-06194-1. PMID:30224724
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (233 Kb) [Save to disk]
  • Biological Unit Coordinates (6gn8.pdb1.gz) 227 Kb
  • LPC: Ligand-Protein Contacts for 6GN8
  • CSU: Contacts of Structural Units for 6GN8
  • Structure Factors (1551 Kb)
  • Retrieve 6GN8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6GN8 from S2C, [Save to disk]
  • View 6GN8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6GN8
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6gn8_C] [6gn8_B] [6gn8_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6GN8
  • Community annotation for 6GN8 at PDBWiki (http://pdbwiki.org)

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