6GOV Transcription date Jun 04, 2018
title Structure Of The Rna Polymerase Lambda-Based Antitermination
authors B.Loll, F.Krupp, N.Said, Y.Huang, J.Buerger, T.Mielke, C.M.T.Spahn
compound source
Molecule: Transcription Terminationantitermination Protein
Chain: A
Engineered: Yes
Organism_scientific: Escherichia Coli O157:H7
Organism_taxid: 83334
Gene: Nusa, Z4530, Ecs4050
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid

Molecule: Transcription Antitermination Protein Nusb
Chain: B
Synonym: Antitermination Factor Nusb
Engineered: Yes

Organism_scientific: Escherichia Coli O157:H7
Organism_taxid: 83334
Gene: Nusb, Z0518, Ecs0469
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid

Molecule: 30s Ribosomal Protein S10
Chain: E
Engineered: Yes

Organism_scientific: Escherichia Coli O157:H7
Organism_taxid: 83334
Gene: Rpsj, Nuse, Z4692, Ecs4186
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid

Molecule: Transcription Terminationantitermination Protein
Chain: G
Engineered: Yes

Organism_scientific: Escherichia Coli O157:H7
Organism_taxid: 83334
Gene: Nusg, Z5555, Ecs4905
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid

Molecule: Antitermination Protein N
Chain: N
Synonym: Regulatory Protein N,Pn
Engineered: Yes

Organism_scientific: Escherichia Phage Lambda
Organism_taxid: 10710
Gene: N, Lambdap49
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid

Molecule: Dna-Directed Rna Polymerase Subunit Alpha
Chain: U, V
Synonym: Rnap Subunit Alpha,Rna Polymerase Subunit Alpha, Transcriptase Subunit Alpha;
Ec: 2.7.7.6
Engineered: Yes

Organism_scientific: Escherichia Coli O157:H7
Organism_taxid: 83334
Gene: Rpoa, Z4665, Ecs4160
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid

Molecule: Dna-Directed Rna Polymerase Subunit Omega
Chain: W
Synonym: Rnap Omega Subunit,Rna Polymerase Omega Subunit, Transcriptase Subunit Omega;
Ec: 2.7.7.6
Engineered: Yes

Organism_scientific: Escherichia Coli O157:H7
Organism_taxid: 83334
Gene: Rpoz, Z5075, Ecs4524
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Dna-Directed Rna Polymerase Subunit Beta
Chain: X
Synonym: Rnap Subunit Beta,Rna Polymerase Subunit Beta,Tran Subunit Beta;
Ec: 2.7.7.6
Engineered: Yes

Organism_scientific: Escherichia Coli O157:H7
Organism_taxid: 83334
Gene: Rpob, Z5560, Ecs4910
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid

Molecule: Dna-Directed Rna Polymerase Subunit Beta'
Chain: Y
Synonym: Rnap Subunit Beta',Rna Polymerase Subunit Beta', Transcriptase Subunit Beta';
Ec: 2.7.7.6
Engineered: Yes

Organism_scientific: Escherichia Coli O157:H7
Organism_taxid: 83334
Gene: Rpoc, Z5561, Ecs4911
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid

Molecule: Dna (I)
Chain: K
Engineered: Yes
Other_details: Designed Sequence

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: Dna (II)
Chain: L
Engineered: Yes
Other_details: Designed Sequence

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: Rna (Transcription Bubble)
Chain: R
Engineered: Yes
Other_details: Designed Sequence

Organism_scientific: Synthetic Construct
Organism_taxid: 32630
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 3.70 Å
ligand MG, ZN enzyme Transferase E.C.2.7.7.6 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


B


E


G


N


V, U


W


X


Y


Primary referenceStructural Basis for the Action of an All-Purpose Transcription Anti-termination Factor., Krupp F, Said N, Huang YH, Loll B, Burger J, Mielke T, Spahn CMT, Wahl MC, Mol Cell. 2019 Feb 12. pii: S1097-2765(19)30036-X. doi:, 10.1016/j.molcel.2019.01.016. PMID:30795892
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (642 Kb) [Save to disk]
  • Biological Unit Coordinates (6gov.pdb1.gz) 634 Kb
  • LPC: Ligand-Protein Contacts for 6GOV
  • CSU: Contacts of Structural Units for 6GOV
  • Retrieve 6GOV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6GOV from S2C, [Save to disk]
  • View 6GOV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6GOV
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6gov from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6gov_W] [6gov_G] [6gov_B] [6gov_V] [6gov_X] [6gov_R] [6gov_L] [6gov_A] [6gov_K] [6gov_U] [6gov_Y] [6gov_N] [6gov_E]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6GOV
  • Community annotation for 6GOV at PDBWiki (http://pdbwiki.org)

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