6GRB Dna date Jun 11, 2018
title Eukaryotic Junction-Resolving Enzyme Gen-1 Binding With Pota
authors D.M.J.Lilley, Y.Liu, D.J.Freeman
compound source
Molecule: Nuclease-Like Protein
Chain: A
Engineered: Yes
 Organism_scientific: Chaetomium Thermophilum (Strain Dsm 14 144.50 Imi 039719);
Organism_taxid: 759272
Gene: Ctht_0007290
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Dna (5'-D(Tpgpapgpcpgpgptpgpgptptpgp 3');
Chain: H
Engineered: Yes
Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_taxid: 9606

Molecule: Dna (5'-D(Tpapcpcpcpapcpcpapcpcpgpcp 3');
Chain: R
Engineered: Yes
Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_taxid: 9606
symmetry Space Group: P 31 2 1
R_factor 0.247 R_Free 0.273
crystal
cell
length a length b length c angle alpha angle beta angle gamma
97.960 97.960 119.761 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.40 Å
ligand MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceA monovalent ion in the DNA binding interface of the eukaryotic junction-resolving enzyme GEN1., Liu Y, Freeman ADJ, Declais AC, Lilley DMJ, Nucleic Acids Res. 2018 Sep 24. pii: 5106143. doi: 10.1093/nar/gky863. PMID:30247722
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (153 Kb) [Save to disk]
  • Biological Unit Coordinates (6grb.pdb1.gz) 147 Kb
  • LPC: Ligand-Protein Contacts for 6GRB
  • CSU: Contacts of Structural Units for 6GRB
  • Structure Factors (1078 Kb)
  • Retrieve 6GRB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6GRB from S2C, [Save to disk]
    • View 6GRB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6GRB
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6grb_A] [6grb_H] [6grb_R]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6GRB
  • Community annotation for 6GRB at PDBWiki (http://pdbwiki.org)

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