6GST Transferase date Jan 26, 1996
title First-Sphere And Second-Sphere Electrostatic Effects In The Site Of A Class Mu Glutathione Transferase
authors G.Xiao, X.Ji, R.N.Armstrong, G.L.Gilliland
compound source
Molecule: Mu Class Glutathione S-Transferase Of Isoenzyme 3
Chain: A, B
Synonym: Rat Gst
Ec: 2.5.1.18
Engineered: Yes
Organism_scientific: Rattus Rattus
Organism_common: Black Rat
Organism_taxid: 10117
Organ: Liver
Gene: Cdna Insert Of Clone Pgt33mx
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: M5219
Expression_system_plasmid: Pgt33mx
Expression_system_gene: Cdna Insert Of Clone Pgt33mx
symmetry Space Group: C 1 2 1
R_factor 0.149 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
88.240 69.440 81.280 90.00 106.01 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand GSH enzyme Transferase E.C.2.5.1.18 BRENDA
note 6GST supersedes 1GST
related structures by homologous chain: 1YKC, 6GSY
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceFirst-sphere and second-sphere electrostatic effects in the active site of a class mu gluthathione transferase., Xiao G, Liu S, Ji X, Johnson WW, Chen J, Parsons JF, Stevens WJ, Gilliland GL, Armstrong RN, Biochemistry 1996 Apr 16;35(15):4753-65. PMID:8664265
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (87 Kb) [Save to disk]
  • Biological Unit Coordinates (6gst.pdb1.gz) 82 Kb
  • LPC: Ligand-Protein Contacts for 6GST
  • CSU: Contacts of Structural Units for 6GST
  • Likely Quarternary Molecular Structure file(s) for 6GST
  • Retrieve 6GST in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6GST from S2C, [Save to disk]
  • View 6GST in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6GST
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 6GST, from MSDmotif at EBI
  • Genome occurence of 6GST's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d6gsta2, region A:1-84 [Jmol] [rasmolscript] [script source]
        - Domain d6gsta1, region A:85-217 [Jmol] [rasmolscript] [script source]
        - Domain d6gstb2, region B:1-84 [Jmol] [rasmolscript] [script source]
        - Domain d6gstb1, region B:85-217 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6gst_B] [6gst_A] [6gst]
  • SWISS-PROT database: [P04905]
  • Domain organization of [GSTM1_RAT] by SWISSPFAM
  • Other resources with information on 6GST
  • Community annotation for 6GST at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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