6GTZ Cell Adhesion date Jun 19, 2018
title Crystal Structure Of A Fimhdsg Complex From E.Coli F18 With Dimannoside Man(Alpha1-3)Man In Space Group P21
authors R.P.Jakob, M.M.Sauer, T.Luber, F.Canonica, G.Navarra, B.Ernst, C.U T.Maier, R.Glockshuber
compound source
Molecule: Fimh Protein
Chain: A, C
Engineered: Yes
Organism_scientific: Escherichia Coli F18+
Organism_taxid: 488477
Gene: Ecp_4655, Fimh
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Hm125
Expression_system_plasmid: Ptrc99a

Molecule: Fimg Protein
Chain: B, D
Engineered: Yes

Synthetic: Yes
Organism_scientific: Escherichia Coli 536
Organism_taxid: 362663
symmetry Space Group: P 1 21 1
R_factor 0.179 R_Free 0.203
crystal
cell
length a length b length c angle alpha angle beta angle gamma
44.637 115.112 63.158 90.00 107.58 90.00
method X-Ray Diffractionresolution 1.72 Å
ligand MAN, MMA enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, C


Primary referenceBinding of the bacterial adhesin FimH to its natural, multivalent high-mannose type glycan targets., Sauer MM, Jakob RP, Luber T, Canonica F, Navarra G, Ernst B, Unverzagt C, Maier T, Glockshuber R, J Am Chem Soc. 2018 Dec 13. doi: 10.1021/jacs.8b10736. PMID:30543411
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (280 Kb) [Save to disk]
  • Biological Unit Coordinates (6gtz.pdb1.gz) 137 Kb
  • Biological Unit Coordinates (6gtz.pdb2.gz) 138 Kb
  • LPC: Ligand-Protein Contacts for 6GTZ
  • CSU: Contacts of Structural Units for 6GTZ
  • Structure Factors (1461 Kb)
  • Retrieve 6GTZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6GTZ from S2C, [Save to disk]
  • View 6GTZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6GTZ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6gtz_B] [6gtz_D] [6gtz_C] [6gtz_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6GTZ
  • Community annotation for 6GTZ at PDBWiki (http://pdbwiki.org)

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