6GX6 Rna Binding Protein date Jun 26, 2018
title Crystal Structure Of Imp3 Rrm12 In Complex With Rna (Acac)
authors M.Jia, H.Gut, A.J.Chao
compound source
Molecule: Insulin-Like Growth Factor 2 Mrna-Binding Protein
Chain: A
Fragment: Rrm12 Domain
Synonym: Imp-3,Igf-II Mrna-Binding Protein 3,Kh Domain-Cont Protein Overexpressed In Cancer,Hkoc,Vickz Family Member 3;
Engineered: Yes
Other_details: N-Terminal Left Residues (Ggs) Due To Tev Cl C-Terminal His6 Tag;
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Igf2bp3, Imp3, Koc1, Vickz3
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_variant: Rossetta2

Molecule: Rna (5'-R(Apcpapc)-3')
Chain: B
Engineered: Yes
Other_details: Post Synthesis: 2'-Deprotect

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_taxid: 9606
symmetry Space Group: P 31 2 1
R_factor 0.181 R_Free 0.236
crystal
cell
length a length b length c angle alpha angle beta angle gamma
75.440 75.440 66.260 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.00 Å
ligand EDO, PO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural basis of IMP3 RRM12 recognition of RNA., Jia M, Gut H, Chao JA, RNA. 2018 Aug 22. pii: rna.065649.118. doi: 10.1261/rna.065649.118. PMID:30135093
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (35 Kb) [Save to disk]
  • Biological Unit Coordinates (6gx6.pdb1.gz) 30 Kb
  • LPC: Ligand-Protein Contacts for 6GX6
  • CSU: Contacts of Structural Units for 6GX6
  • Structure Factors (390 Kb)
  • Retrieve 6GX6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6GX6 from S2C, [Save to disk]
  • View 6GX6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6GX6
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6gx6_A] [6gx6_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6GX6
  • Community annotation for 6GX6 at PDBWiki (http://pdbwiki.org)

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