6GX9 Nuclear Protein date Jun 26, 2018
title Crystal Structure Of The Tnpo3 - Cpsf6 Rsld Complex
authors P.Cherepanov, N.Cook
compound source
Molecule: Transportin-3
Chain: A, B
Synonym: Importin-12,Imp12,Transportin-Sr,Trn-Sr
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Tnpo3, Ipo12
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_plasmid: Petsumo-Tnpo3

Molecule: Cleavage And Polyadenylation Specificity Factor S
Chain: C, D
Synonym: Cleavage And Polyadenylation Specificity Factor 68 Subunit,Cpsf 68 Kda Subunit,Cleavage Factor Im Complex 68 K Subunit,Cfim68,Pre-Mrna Cleavage Factor Im 68 Kda Subunit,P Hpbrii-47;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cpsf6, Cfim68
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 63 2 2
R_factor 0.214 R_Free 0.248
crystal
cell
length a length b length c angle alpha angle beta angle gamma
200.335 200.335 234.807 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.70 Å
ligand BCN, BEN, MG, SEP enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


D, C


Primary referenceDifferential role for phosphorylation in alternative polyadenylation function versus nuclear import of SR-like protein CPSF6., Jang S, Cook NJ, Pye VE, Bedwell GJ, Dudek AM, Singh PK, Cherepanov P, Engelman AN, Nucleic Acids Res. 2019 Mar 27. pii: 5420532. doi: 10.1093/nar/gkz206. PMID:30916345
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (298 Kb) [Save to disk]
  • Biological Unit Coordinates (6gx9.pdb1.gz) 148 Kb
  • Biological Unit Coordinates (6gx9.pdb2.gz) 148 Kb
  • LPC: Ligand-Protein Contacts for 6GX9
  • CSU: Contacts of Structural Units for 6GX9
  • Structure Factors (663 Kb)
  • Retrieve 6GX9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6GX9 from S2C, [Save to disk]
  • View 6GX9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6GX9
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6gx9_B] [6gx9_C] [6gx9_A] [6gx9_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6GX9
  • Community annotation for 6GX9 at PDBWiki (http://pdbwiki.org)

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