6GYK | Transcription | date | Jun 30, 2018 |
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title | Structure Of A Yeast Closed Complex (Core Cc1) | ||||||||||||||
authors | C.Dienemann, B.Schwalb, S.Schilbach, P.Cramer | ||||||||||||||
compound | source | ||||||||||||||
Molecule: Dna-Directed Rna Polymerase II Subunit Rpb1 Chain: A Synonym: Rna Polymerase II Subunit B1,Dna-Directed Rna Poly Largest Subunit,Rna Polymerase II Subunit B220; Ec: 2.7.7.6 |
Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c); Organism_common: Baker'S Yeast Organism_taxid: 559292 | ||||||||||||||
Molecule: Dna-Directed Rna Polymerase II Subunit Rpb2 Chain: B Synonym: Rna Polymerase II Subunit 2,B150,Dna-Directed Rna II 140 Kda Polypeptide; Ec: 2.7.7.6 |
Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c); Organism_common: Baker'S Yeast Organism_taxid: 559292 | ||||||||||||||
Molecule: Dna-Directed Rna Polymerase II Subunit Rpb3 Chain: C Synonym: Rna Polymerase II Subunit B3,B44.5,Dna-Directed Rn Polymerase II 45 Kda Polypeptide; |
Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c); Organism_common: Baker'S Yeast Organism_taxid: 559292 | ||||||||||||||
Molecule: Dna-Directed Rna Polymerase II Subunit Rpb4 Chain: D Synonym: Rna Polymerase II Subunit B4,B32,Dna-Directed Rna II 32 Kda Polypeptide; |
Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c); Organism_common: Baker'S Yeast Organism_taxid: 559292 | ||||||||||||||
Molecule: Dna-Directed Rna Polymerases I, II, And III Subun Chain: E Synonym: Rna Polymerases I,II,And III Subunit Abc1,Abc27,Dn Rna Polymerases I,And III 27 Kda Polypeptide; |
Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c); Organism_common: Baker'S Yeast Organism_taxid: 559292 | ||||||||||||||
Molecule: Dna-Directed Rna Polymerases I, II, And III Subun Chain: F Synonym: Rna Polymerases I,II,And III Subunit Abc2,Abc23,Dn Rna Polymerases I,And III 23 Kda Polypeptide; |
Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c); Organism_common: Baker'S Yeast Organism_taxid: 559292 | ||||||||||||||
Molecule: Dna-Directed Rna Polymerase II Subunit Rpb7 Chain: G Synonym: Rna Polymerase II Subunit B7,B16 |
Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c); Organism_common: Baker'S Yeast Organism_taxid: 559292 | ||||||||||||||
Molecule: Dna-Directed Rna Polymerases I, II, And III Subun Chain: H Synonym: Rna Polymerases I,II,And III Subunit Abc3,Abc14.4, Dna-Directed Rna Polymerases I,And III 14.5 Kda Polypeptide |
Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c); Organism_common: Baker'S Yeast Organism_taxid: 559292 | ||||||||||||||
Molecule: Dna-Directed Rna Polymerase II Subunit Rpb9 Chain: I Synonym: Rna Polymerase II Subunit B9,B12.6,Dna-Directed Rn Polymerase II 14.2 Kda Polypeptide,Dna-Directed Rna Polymer Subunit 9; |
Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c); Organism_common: Baker'S Yeast Organism_taxid: 559292 | ||||||||||||||
Molecule: Dna-Directed Rna Polymerases I, II, And III Subun Chain: J Synonym: Rna Polymerases I,II,And III Subunit Abc5,Abc10-Be Dna-Directed Rna Polymerases I,And III 8.3 Kda Polypeptide; |
Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c); Organism_common: Baker'S Yeast Organism_taxid: 559292 | ||||||||||||||
Molecule: Dna-Directed Rna Polymerase II Subunit Rpb11 Chain: K Synonym: Rna Polymerase II Subunit B11,B13.6,Dna-Directed R Polymerase II 13.6 Kda Polypeptide; |
Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c); Organism_common: Baker'S Yeast Organism_taxid: 559292 | ||||||||||||||
Molecule: Dna-Directed Rna Polymerases I, II, And III Subun Chain: L Synonym: Rna Polymerases I,II,And III Subunit Abc4,Abc10-Al |
Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c); Organism_common: Baker'S Yeast Organism_taxid: 559292 | ||||||||||||||
Molecule: Transcription Initiation Factor Iib Chain: M Synonym: General Transcription Factor Tfiib,Transcription F Engineered: Yes |
Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c); Organism_common: Baker'S Yeast Organism_taxid: 559292 Gene: Sua7, Ypr086w, P9513.4 Expression_system: Escherichia Coli Expression_system_taxid: 562 | ||||||||||||||
Molecule: Gat1 Promoter Chain: N Engineered: Yes |
Synthetic: Yes Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c); Organism_taxid: 559292 | ||||||||||||||
Molecule: Tata-Box-Binding Protein Chain: O Synonym: Tata Sequence-Binding Protein,Tbp,Tata-Binding Fac Box Factor,Transcription Factor D,Transcription Initiation Tfiid Tbp Subunit; Engineered: Yes |
Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c); Organism_common: Baker'S Yeast Organism_taxid: 559292 Gene: Spt15, Btf1, Tbp1, Yer148w Expression_system: Escherichia Coli Expression_system_taxid: 562 | ||||||||||||||
Molecule: Transcription Initiation Factor Iif Subunit Alpha Chain: Q Synonym: Tfiif-Alpha,Tfiif Large Subunit,Transcription Fact Kda Subunit,P105; Engineered: Yes |
Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c); Organism_common: Baker'S Yeast Organism_taxid: 559292 Gene: Tfg1, Ssu71, Ygr186w, G7526 Expression_system: Escherichia Coli Expression_system_taxid: 562 | ||||||||||||||
Molecule: Transcription Initiation Factor Iif Subunit Beta Chain: R Synonym: Atp-Dependent Helicase Tfg2,Tfiif Medium Subunit,T Transcription Factor G 54 Kda Subunit; Ec: 3.6.4.12 Engineered: Yes |
Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c); Organism_common: Baker'S Yeast Organism_taxid: 559292 Gene: Tfg2, Ygr005c Expression_system: Escherichia Coli Expression_system_taxid: 562 | ||||||||||||||
Molecule: Gat1 Promoter Dna Chain: T Engineered: Yes |
Synthetic: Yes Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c); Organism_taxid: 559292 | ||||||||||||||
Molecule: Transcription Initiation Factor Iia Large Subunit Transcription Initiation Factor Iia Large Subunit; Chain: U Synonym: Tfiia Large Subunit,Tfiia 32 Kda Subunit,Tfiia Lar Subunit,Tfiia 32 Kda Subunit; Engineered: Yes |
Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c); Organism_common: Baker'S Yeast Organism_taxid: 559292 Gene: Toa1, Yor194c Expression_system: Escherichia Coli Expression_system_taxid: 562 | ||||||||||||||
Molecule: Transcription Initiation Factor Iia Subunit 2 Chain: V Synonym: General Transcription Factor Iia Subunit 2,Tfiia 1 Subunit,Transcription Initiation Factor Iia Small Chain,Tra Initiation Factor Iia Small Subunit; Engineered: Yes |
Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c); Organism_common: Baker'S Yeast Organism_taxid: 559292 Gene: Toa2, Ykl058w Expression_system: Escherichia Coli Expression_system_taxid: 562 | ||||||||||||||
symmetry | Space Group: P 1 |
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crystal cell |
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method | Electron Microscopy | resolution | 5.10 Å | ||||||||||||
ligand | MG, ZN | enzyme | Transferase E.C.2.7.7.6 BRENDA | ||||||||||||
Gene Ontology | |||||||||||||||
Primary reference | Promoter Distortion and Opening in the RNA Polymerase II Cleft., Dienemann C, Schwalb B, Schilbach S, Cramer P, Mol Cell. 2018 Nov 16. pii: S1097-2765(18)30846-3. doi:, 10.1016/j.molcel.2018.10.014. PMID:30472190 |
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OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science |