6GYS Dna Binding Protein date Jul 01, 2018
title Cryo-Em Structure Of The Cbf3-Cen3 Complex Of The Budding Ye Kinetochore
authors K.Yan, Z.Zhang, J.Yang, S.H.Mclaughlin, D.Barford
compound source
Molecule: Centromere Dna-Binding Protein Complex Cbf3 Subun
Chain: A, H
Synonym: Chromosome Transmission Fidelity Protein 13,Kineto Protein Ctf13;
Engineered: Yes
Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
Gene: Ctf13, Cbf3c, Ymr094w, Ym6543.01, Ym9582.19
Expression_system: Unidentified Baculovirus
Expression_system_taxid: 10469

Molecule: Centromere Dna-Binding Protein Complex Cbf3 Subun
Chain: B, C, I, J
Synonym: Centromere Protein 3
Engineered: Yes
Other_details: Zn

Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
Gene: Cep3, Cbf3, Cbf3b, Csl1, Ymr168c, Ym8520.17c
Expression_system: Unidentified Baculovirus
Expression_system_taxid: 10469

Molecule: Suppressor Of Kinetochore Protein 1
Chain: D, K
Synonym: Centromere Dna-Binding Protein Complex Cbf3 Subuni Ubiquitin Ligase Complex Scf Subunit Skp1;
Engineered: Yes

Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
Gene: Skp1, Cbf3d, Ydr328c, D9798.14
Expression_system: Unidentified Baculovirus
Expression_system_taxid: 10469

Molecule: Centromere Dna-Binding Protein Complex Cbf3 Subun
Chain: E, L
Synonym: Centromere-Binding Factor 2,Chromosome Transmissio Protein 14,Kinetochore Protein Ctf14;
Engineered: Yes

Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
Gene: Cbf2, Cbf3a, Cep2, Ctf14, Ndc10, Ygr140w
Expression_system: Unidentified Baculovirus
Expression_system_taxid: 10469

Molecule: Dna (52-Mer)
Chain: F
Engineered: Yes

Organism_scientific: Saccharomyces Cerevisiae
Organism_taxid: 4932
Expression_system: Unidentified Baculovirus
Expression_system_taxid: 10469

Molecule: Dna (52-Mer)
Chain: G
Engineered: Yes

Organism_scientific: Saccharomyces Cerevisiae
Organism_taxid: 4932
Expression_system: Unidentified Baculovirus
Expression_system_taxid: 10469
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 4.40 Å
ligand ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, H


E, L


J, B, C, I
  • RNA polymerase II transcript...


  • K, D


    Primary referenceArchitecture of the CBF3-centromere complex of the budding yeast kinetochore., Yan K, Zhang Z, Yang J, McLaughlin SH, Barford D, Nat Struct Mol Biol. 2018 Nov 26. pii: 10.1038/s41594-018-0154-1. doi:, 10.1038/s41594-018-0154-1. PMID:30478265
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (711 Kb) [Save to disk]
  • Biological Unit Coordinates (6gys.pdb1.gz) 698 Kb
  • LPC: Ligand-Protein Contacts for 6GYS
  • CSU: Contacts of Structural Units for 6GYS
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  • Fold representative 6gys from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6gys_H] [6gys_K] [6gys_B] [6gys_A] [6gys_C] [6gys_E] [6gys_L] [6gys_G] [6gys_D] [6gys_F] [6gys_J] [6gys_I]
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