6H05 Transferase date Jul 06, 2018
title Cryo-Electron Microscopic Structure Of The Dihydrolipoamide Succinyltransferase (E2) Component Of The Human Alpha-Ketog (2-Oxoglutarate) Dehydrogenase Complex [Residues 218-453]
authors B.Nagy, Z.Zambo, A.Hubert, M.Polak, N.S.Nemeria, J.Novacek, F.Jord V.Adam-Vizi, A.Ambrus
compound source
Molecule: Dihydrolipoyllysine-Residue Succinyltransferase C Of 2-Oxoglutarate Dehydrogenase Complex, Mitochondrial;
Chain: A
Synonym: 2-Oxoglutarate Dehydrogenase Complex Component E2, Dihydrolipoamide Succinyltransferase Component Of 2-Oxoglut Dehydrogenase Complex,E2k;
Ec: 2.3.1.61
Engineered: Yes
Other_details: N-Terminal Twin-Strep (Affinity) Tag With Pr
Cleavage Site And Linkers: Maswshpqfekgggsgggsggsawshpqfekl Density Was Found For 236 Residues [218-453]
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Dlst, Dlts
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet52b+
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 2.90 Å
ligand
enzyme Transferase E.C.2.3.1.61 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (40 Kb) [Save to disk]
  • Biological Unit Coordinates (6h05.pdb1.gz) 783 Kb
  • CSU: Contacts of Structural Units for 6H05
  • Retrieve 6H05 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6H05 from S2C, [Save to disk]
    • View 6H05 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6H05
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6h05_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6H05
  • Community annotation for 6H05 at PDBWiki (http://pdbwiki.org)

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