6H0F	Signaling Protein	date	Jul 09, 2018
title	Structure Of Ddb1-Crbn-Pomalidomide Complex Bound To Ikzf1(Z
authors	G.Petzold, R.D.Bunker, N.H.Thoma
compound		source
Molecule: Dna Damage-Binding Protein 1,Dna Damage-Binding P Dna Damage-Binding Protein 1,Dna Damage-Binding Protein 1; Chain: A, D, G, J Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Ddb1, Xap1 Expression_system: Trichoplusia Ni Cypovirus 15 Expression_system_taxid: 134606
Molecule: Protein Cereblon Chain: B, E, H, K Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Crbn, Ad-006 Expression_system: Trichoplusia Ni Expression_system_common: Cabbage Looper Expression_system_taxid: 7111
Molecule: Dna-Binding Protein Ikaros Chain: C, F, I, L Synonym: Ikaros Family Zinc Finger Protein 1,Lymphoid Trans Factor Lyf-1; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Ikzf1, Ik1, Ikaros, Lyf1, Znfn1a1 Expression_system: Trichoplusia Ni Expression_system_common: Cabbage Looper Expression_system_taxid: 7111
symmetry	Space Group: P 21 21 21	R_factor 0.212 R_Free 0.234
crystal cell	length a length b length c angle alpha angle beta angle gamma 161.450 177.860 242.470 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	3.25 Å
ligand	Y70, ZN	enzyme
Gene Ontology	Chain Function Process Component A, J, D, G H, K, E, B
Primary reference	Defining the human C2H2 zinc finger degrome targeted by thalidomide analogs through CRBN., Sievers QL, Petzold G, Bunker RD, Renneville A, Slabicki M, Liddicoat BJ, Abdulrahman W, Mikkelsen T, Ebert BL, Thoma NH, Science. 2018 Nov 2;362(6414). pii: 362/6414/eaat0572. doi:, 10.1126/science.aat0572. PMID:30385546

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (3214 Kb) [Save to disk] Biological Unit Coordinates (6h0f.pdb1.gz) 803 Kb Biological Unit Coordinates (6h0f.pdb2.gz) 808 Kb Biological Unit Coordinates (6h0f.pdb3.gz) 812 Kb Biological Unit Coordinates (6h0f.pdb4.gz) 815 Kb LPC: Ligand-Protein Contacts for 6H0F CSU: Contacts of Structural Units for 6H0F Structure Factors (7445 Kb) Retrieve 6H0F in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 6H0F from S2C, [Save to disk]

View 6H0F in 3D

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Visual 3D analysis of 6H0F

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [6h0f_K] [6h0f_L] [6h0f_A] [6h0f_B] [6h0f_J] [6h0f_C] [6h0f_E] [6h0f_I] [6h0f_G] [6h0f_F] [6h0f_D] [6h0f_H] SWISS-PROT database: Domain organization of by SWISSPFAM

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