6H1E Gene Regulation date Jul 11, 2018
title Crystal Structure Of C21orf127-Trmt112 In Complex With Sah A Peptide
authors S.Wang, B.Hermann, E.Metzger, L.Peng, O.Einsle, R.Schuele
compound source
Molecule: Hemk Methyltransferase Family Member 2
Chain: A
Synonym: M.Hsahemk2p,N(6)-Adenine-Specific Dna Methyltransf
Ec: 2.1.1.-
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: N6amt1, C21orf127, Hemk2, Pred28
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Multifunctional Methyltransferase Subunit Trm112- Protein;
Chain: B
Synonym: Trna Methyltransferase 112 Homolog
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Trmt112, Ad-001, Hspc152, Hspc170
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Histone H4 Peptide
Chain: S
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 42 21 2
R_factor 0.196 R_Free 0.245
crystal
cell
length a length b length c angle alpha angle beta angle gamma
71.231 71.231 130.808 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand
enzyme Transferase E.C.2.1.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


B


S


Primary referenceKMT9 monomethylates histone H4 lysine 12 and controls proliferation of prostate cancer cells., Metzger E, Wang S, Urban S, Willmann D, Schmidt A, Offermann A, Allen A, Sum M, Obier N, Cottard F, Ulferts S, Preca BT, Hermann B, Maurer J, Greschik H, Hornung V, Einsle O, Perner S, Imhof A, Jung M, Schule R, Nat Struct Mol Biol. 2019 May;26(5):361-371. doi: 10.1038/s41594-019-0219-9. Epub, 2019 May 6. PMID:31061526
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (114 Kb) [Save to disk]
  • Biological Unit Coordinates (6h1e.pdb1.gz) 107 Kb
  • CSU: Contacts of Structural Units for 6H1E
  • Structure Factors (1112 Kb)
  • Retrieve 6H1E in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6H1E from S2C, [Save to disk]
  • View 6H1E in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6H1E
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6h1e from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6h1e_B] [6h1e_A] [6h1e_S]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6H1E
  • Community annotation for 6H1E at PDBWiki (http://pdbwiki.org)

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