6H25 Rna Binding Protein date Jul 13, 2018
title Human Nuclear Rna Exosome Exo-10-Mpp6 Complex
authors P.Gerlach, J.M.Schuller, S.Falk, J.Basquin, E.Conti
compound source
Molecule: Exosome Complex Component Rrp45
Chain: A
Synonym: Autoantigen Pmscl 1,Exosome Component 9,P75 Polym Scleroderma Overlap Syndrome-Associated Autoantigen, Polymyositisscleroderma Autoantigen 1,Polymyositissclerod Autoantigen 75 Kda,Pmscl-75;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Exosc9, Pmscl1
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Exosome Complex Component Rrp41
Chain: B
Synonym: Exosome Component 4,Ribosomal Rna-Processing Prote P12a;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Exosc4, Rrp41, Ski6
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Exosome Complex Component Rrp43
Chain: C
Synonym: Exosome Component 8,Opa-Interacting Protein 2,Oip- Ribosomal Rna-Processing Protein 43,P9;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Exosc8, Oip2, Rrp43
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Exosome Complex Component Rrp46
Chain: D
Synonym: Chronic Myelogenous Leukemia Tumor Antigen 28,Exos Component 5,Ribosomal Rna-Processing Protein 46,P12b;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Exosc5, Cml28, Rrp46
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Exosome Complex Component Rrp42
Chain: E
Synonym: Exosome Component 7,Ribosomal Rna-Processing Prote
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Exosc7, Kiaa0116, Rrp42
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Exosome Complex Component Mtr3
Chain: F
Synonym: Exosome Component 6,Mrna Transport Regulator 3 Hom Hmtr3,P11;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Exosc6, Mtr3
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Exosome Complex Component Rrp40
Chain: G
Synonym: Exosome Component 3,Ribosomal Rna-Processing Prote
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Exosc3, Rrp40, Cgi-102
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Exosome Complex Component Rrp4
Chain: H
Synonym: Exosome Component 2,Ribosomal Rna-Processing Prote
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Exosc2, Rrp4
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Exosome Complex Component Csl4
Chain: I
Synonym: Exosome Component 1
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Exosc1, Csl4, Cgi-108
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Exosome Complex Exonuclease Rrp44
Chain: J
Synonym: Protein Dis3 Homolog,Ribosomal Rna-Processing Prot
Ec: 3.1.13.-,3.1.26.-
Engineered: Yes
Mutation: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Dis3, Kiaa1008, Rrp44
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: M-Phase Phosphoprotein 6
Chain: K
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Mphosph6, Mpp6
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: U44 Ssrna
Chain: R
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 3.80 Å
ligand
enzyme Hydrolase E.C.3.1.13 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


B
  • 3'-5'-exoribonuclease activi...
  • exoribonuclease activity


  • C


    D
  • 3'-5'-exoribonuclease activi...
  • exoribonuclease activity


  • E


    F
  • exoribonuclease activity


  • G


    H


    I
  • exoribonuclease activity


  • J
  • 3'-5'-exoribonuclease activi...
  • nuclease activity
  • endonuclease activity
  • exonuclease activity
  • ribonuclease activity


  • K


    Primary referenceDistinct and evolutionary conserved structural features of the human nuclear exosome complex., Gerlach P, Schuller JM, Bonneau F, Basquin J, Reichelt P, Falk S, Conti E, Elife. 2018 Jul 26;7. pii: 38686. doi: 10.7554/eLife.38686. PMID:30047866
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (415 Kb) [Save to disk]
  • Biological Unit Coordinates (6h25.pdb1.gz) 403 Kb
  • CSU: Contacts of Structural Units for 6H25
  • Retrieve 6H25 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6H25 from S2C, [Save to disk]
  • View 6H25 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6H25
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6h25 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6h25_I] [6h25_A] [6h25_C] [6h25_B] [6h25_G] [6h25_K] [6h25_F] [6h25_E] [6h25_R] [6h25_H] [6h25_D] [6h25_J]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6H25
  • Community annotation for 6H25 at PDBWiki (http://pdbwiki.org)

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