6H4K Immune System date Jul 21, 2018
title Structure Of The Usp25 C-Terminal Domain
authors T.A.Klemm, F.Sauer, C.Kisker
compound source
Molecule: Ubiquitin Carboxyl-Terminal Hydrolase 25
Chain: A
Synonym: Deubiquitinating Enzyme 25,Usp On Chromosome 21,Ub Thioesterase 25,Ubiquitin-Specific-Processing Protease 25;
Ec: 3.4.19.12
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Usp25, Usp21
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
symmetry Space Group: P 43 21 2
R_factor 0.192 R_Free 0.222
crystal
cell
length a length b length c angle alpha angle beta angle gamma
87.008 87.008 86.790 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.05 Å
ligand CL, MSE enzyme Hydrolase E.C.3.4.19.12 BRENDA
Primary referenceDifferential Oligomerization of the Deubiquitinases USP25 and USP28 Regulates Their Activities., Sauer F, Klemm T, Kollampally RB, Tessmer I, Nair RK, Popov N, Kisker C, Mol Cell. 2019 Mar 22. pii: S1097-2765(19)30140-6. doi:, 10.1016/j.molcel.2019.02.029. PMID:30926243
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (102 Kb) [Save to disk]
  • Biological Unit Coordinates (6h4k.pdb1.gz) 95 Kb
  • LPC: Ligand-Protein Contacts for 6H4K
  • CSU: Contacts of Structural Units for 6H4K
  • Structure Factors (840 Kb)
  • Retrieve 6H4K in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6H4K from S2C, [Save to disk]
  • View 6H4K in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6H4K
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6h4k_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6H4K
  • Community annotation for 6H4K at PDBWiki (http://pdbwiki.org)

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