6H60 Oxidoreductase date Jul 25, 2018
title Pseudo-Atomic Structural Model Of The E3bp Component Of The Pyruvate Dehydrogenase Multienzyme Complex
authors D.Haselbach, S.Prajapati, K.Tittmann, H.Stark
compound source
Molecule: Pyruvate Dehydrogenase Protein X Component, Mitoc
Chain: A
Synonym: Dihydrolipoamide Dehydrogenase-Binding Protein Of Dehydrogenase Complex,E3-Binding Protein,E3bp,Lipoyl-Contai Pyruvate Dehydrogenase Complex Component X,Prox;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Pdhx, Pdx1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 6.00 Å
Gene
Ontology
ChainFunctionProcessComponent
A
  • pyruvate dehydrogenase (NAD+...


  • Primary referenceStructural and Functional Analyses of the Human PDH Complex Suggest a "Division-of-Labor" Mechanism by Local E1 and E3 Clusters., Prajapati S, Haselbach D, Wittig S, Patel MS, Chari A, Schmidt C, Stark H, Tittmann K, Structure. 2019 Apr 26. pii: S0969-2126(19)30131-5. doi:, 10.1016/j.str.2019.04.009. PMID:31130485
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (23 Kb) [Save to disk]
  • Biological Unit Coordinates (6h60.pdb1.gz) 17 Kb
  • CSU: Contacts of Structural Units for 6H60
  • Retrieve 6H60 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6H60 from S2C, [Save to disk]
  • View 6H60 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6H60
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6h60 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6h60_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6H60
  • Community annotation for 6H60 at PDBWiki (http://pdbwiki.org)

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