6H6J Oxygen Binding date Jul 27, 2018
title Carbomonoxy Murine Neuroglobin Gly-Loop Mutant
authors C.Exertier, B.Vallone, C.Savino, I.Freda, L.C.Montemiglio, G.Ceru A.Scaglione, G.Parisi
compound source
Molecule: Neuroglobin
Chain: A
Engineered: Yes
 Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Gene: Ngb
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_variant: Plyss
symmetry Space Group: P 31 2 1
R_factor 0.194 R_Free 0.246
crystal
cell
length a length b length c angle alpha angle beta angle gamma
74.859 74.859 77.229 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.60 Å
ligand CMO, GOL, HEM, PEG, SO4, TRS enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceProximal and distal control for ligand binding in neuroglobin: role of the CD loop and evidence for His64 gating., Exertier C, Milazzo L, Freda I, Montemiglio LC, Scaglione A, Cerutti G, Parisi G, Anselmi M, Smulevich G, Savino C, Vallone B, Sci Rep. 2019 Mar 29;9(1):5326. doi: 10.1038/s41598-019-41780-3. PMID:30926858
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (35 Kb) [Save to disk]
  • Biological Unit Coordinates (6h6j.pdb1.gz) 30 Kb
  • LPC: Ligand-Protein Contacts for 6H6J
  • CSU: Contacts of Structural Units for 6H6J
  • Structure Factors (228 Kb)
  • Retrieve 6H6J in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6H6J from S2C, [Save to disk]
    • View 6H6J in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6H6J
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6h6j_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6H6J
  • Community annotation for 6H6J at PDBWiki (http://pdbwiki.org)

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