6H7X Chaperone date Jul 31, 2018
title First X-Ray Structure Of Full-Length Human Ruvb-Like 2.
authors S.Silva, J.Brito, P.Matias, T.Bandeiras
compound source
Molecule: Ruvb-Like 2
Chain: A
Synonym: 48 Kda Tata Box-Binding Protein-Interacting Protei Tbp-Interacting Protein,51 Kda Erythrocyte Cytosolic Protei Ino80 Complex Subunit J,Repressing Pontin 52,Reptin 52,Tip4 Associated Protein 54-Beta,Tap54-Beta;
Ec: 3.6.4.12
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ruvbl2, Ino80j, Tip48, Tip49b, Cgi-46
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 6
R_factor 0.205 R_Free 0.237
crystal
cell
length a length b length c angle alpha angle beta angle gamma
123.023 123.023 60.880 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.89 Å
ligand
enzyme Hydrolase E.C.3.6.4.12 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A
  • DNA helicase activity
  • transcription corepressor ac...
  • 5'-3' DNA helicase activity


  • Primary referenceX-ray structure of full-length human RuvB-Like 2 - mechanistic insights into coupling between ATP binding and mechanical action., Silva STN, Brito JA, Arranz R, Sorzano COS, Ebel C, Doutch J, Tully MD, Carazo JM, Carrascosa JL, Matias PM, Bandeiras TM, Sci Rep. 2018 Sep 13;8(1):13726. doi: 10.1038/s41598-018-31997-z. PMID:30213962
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (130 Kb) [Save to disk]
  • Biological Unit Coordinates (6h7x.pdb1.gz) 736 Kb
  • CSU: Contacts of Structural Units for 6H7X
  • Structure Factors (469 Kb)
  • Retrieve 6H7X in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6H7X from S2C, [Save to disk]
  • View 6H7X in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6H7X
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6h7x from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6h7x_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6H7X
  • Community annotation for 6H7X at PDBWiki (http://pdbwiki.org)

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