6H8P	Oxidoreductase	date	Aug 03, 2018
title	Jmjd2a Kdm4a Complexed With Ni(II), Nog And Histone H1.4(18 Peptide (15-Mer)
authors	R.Chowdhury, L.J.Walport, C.J.Schofield
compound		source
Molecule: Lysine-Specific Demethylase 4a Chain: A, B Synonym: Jmjc Domain-Containing Histone Demethylation Prote Jumonji Domain-Containing Protein 2a; Ec: 1.14.11.- Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Kdm4a, Jhdm3a, Jmjd2, Jmjd2a, Kiaa0677 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_variant: R3 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pnic28-Bsa4
Molecule: Histone H1.4 Chain: C, D Synonym: Histone H1b,Histone H1s-4 Engineered: Yes		Synthetic: Yes Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606
symmetry	Space Group: P 21 21 2	R_factor 0.192 R_Free 0.212
crystal cell	length a length b length c angle alpha angle beta angle gamma 100.722 150.146 57.601 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.98 Å
ligand	CL, GOL, M3L, NI, OGA, ZN	enzyme	Oxidoreductase E.C.1.14.11 BRENDA
Primary reference	Mechanistic and Structural Studies of KDM-Catalysed Demethylation of Histone 1 Isotype 4 at Lysine 26., Walport LJ, Hopkinson RJ, Chowdhury R, Zhang Y, Bonnici J, Schiller R, Kawamura A, Schofield CJ, FEBS Lett. 2018 Aug 29. doi: 10.1002/1873-3468.13231. PMID:30156264

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (362 Kb) [Save to disk] Biological Unit Coordinates (6h8p.pdb1.gz) 178 Kb Biological Unit Coordinates (6h8p.pdb2.gz) 178 Kb LPC: Ligand-Protein Contacts for 6H8P CSU: Contacts of Structural Units for 6H8P Structure Factors (701 Kb) Retrieve 6H8P in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 6H8P from S2C, [Save to disk]

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Visual 3D analysis of 6H8P

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Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [6h8p_D] [6h8p_A] [6h8p_C] [6h8p_B] SWISS-PROT database: Domain organization of by SWISSPFAM

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