6H9V Viral Protein date Aug 06, 2018
title Crystal Structure Of Deaminated P Domain From Norovirus Stra Gii-4 In Complex With Fuc
authors P.H.O.Meyer, B.S.Blaum
compound source
Molecule: Vp1
Chain: A, B
Engineered: Yes
Other_details: E373 Is Converted To Ias (Isoaspartate)
 Organism_scientific: Norovirus Hugii-4saga42006jp
Organism_taxid: 546981
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
symmetry Space Group: P 1 21 1
R_factor 0.147 R_Free 0.183
crystal
cell
length a length b length c angle alpha angle beta angle gamma
54.290 83.950 65.130 90.00 95.78 90.00
method X-Ray Diffractionresolution 1.52 Å
ligand IAS, MFU, MG enzyme
Primary referenceA post-translational modification of human Norovirus capsid protein attenuates glycan binding., Mallagaray A, Creutznacher R, Dulfer J, Mayer PHO, Grimm LL, Orduna JM, Trabjerg E, Stehle T, Rand KD, Blaum BS, Uetrecht C, Peters T, Nat Commun. 2019 Mar 21;10(1):1320. doi: 10.1038/s41467-019-09251-5. PMID:30899001
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (310 Kb) [Save to disk]
  • Biological Unit Coordinates (6h9v.pdb1.gz) 303 Kb
  • LPC: Ligand-Protein Contacts for 6H9V
  • CSU: Contacts of Structural Units for 6H9V
  • Structure Factors (701 Kb)
  • Retrieve 6H9V in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6H9V from S2C, [Save to disk]
    • View 6H9V in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6H9V
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6h9v_A] [6h9v_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6H9V
  • Community annotation for 6H9V at PDBWiki (http://pdbwiki.org)

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