6HDN Transcription date Aug 18, 2018
title Crystal Structure Of Human Atad2 Bromodomain In Complex With 8-((8-Methyl-8-Azabicyclooctan-3-Yl)Amino)-1,7-Naphthyridin
authors C.Chung
compound source
Molecule: Atpase Family Aaa Domain-Containing Protein 2
Chain: A
Synonym: Aaa Nuclear Coregulator Cancer-Associated Protein,
Ec: 3.6.1.3
Engineered: Yes
Other_details: Sm Remains From Tag Cleavage
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Atad2, L16, Pro2000
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_plasmid: Pnic28-Bsa4
symmetry Space Group: P 65 2 2
R_factor 0.194 R_Free 0.230
crystal
cell
length a length b length c angle alpha angle beta angle gamma
79.070 79.070 138.388 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.90 Å
ligand EDO, FZB, SO4 enzyme Hydrolase E.C.3.6.1.3 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceAiming to Miss a Moving Target: Bromo and Extra Terminal Domain (BET) Selectivity in Constrained ATAD2 Inhibitors., Bamborough P, Chung CW, Furze RC, Grandi P, Michon AM, Watson RJ, Mitchell DJ, Barnett H, Prinjha RK, Rau C, Sheppard RJ, Werner T, Demont EH, J Med Chem. 2018 Sep 18. doi: 10.1021/acs.jmedchem.8b00862. PMID:30226378
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (56 Kb) [Save to disk]
  • Biological Unit Coordinates (6hdn.pdb1.gz) 52 Kb
  • LPC: Ligand-Protein Contacts for 6HDN
  • CSU: Contacts of Structural Units for 6HDN
  • Structure Factors (969 Kb)
  • Retrieve 6HDN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6HDN from S2C, [Save to disk]
  • View 6HDN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6HDN
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6hdn_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6HDN
  • Community annotation for 6HDN at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science