6HED	Hydrolase	date	Aug 20, 2018
title	Pan-Proteasome In State 5
authors	P.Majumder, T.Rudack, F.Beck, W.Baumeister
compound		source
Molecule: Proteasome Subunit Alpha Chain: A, a, B, b, C, c, D, d, E, e, F, f, G, g Synonym: 20s Proteasome Alpha Subunit,Proteasome Core Prote Ec: 3.4.25.1 Engineered: Yes		Organism_scientific: Archaeoglobus Fulgidus Dsm 4304 Organism_taxid: 224325 Gene: Psma, Af_0490 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Proteasome Subunit Beta Chain: 1, h, 2, I, 3, j, 4, k, 5, l, 6, m, 7, n Synonym: 20s Proteasome Beta Subunit,Proteasome Core Protei Ec: 3.4.25.1 Engineered: Yes		Organism_scientific: Archaeoglobus Fulgidus Dsm 4304 Organism_taxid: 224325 Gene: Psmb, Af_0481 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Proteasome-Activating Nucleotidase Chain: H, I, K, L, M, J Synonym: Pan,Proteasomal Atpase,Proteasome Regulatory Atpas Proteasome Regulatory Particle; Engineered: Yes		Organism_scientific: Archaeoglobus Fulgidus Dsm 4304 Organism_taxid: 224325 Gene: Pan, Af_1976 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 1	R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma 1.000 1.000 1.000 90.00 90.00 90.00
method	Electron Microscopy	resolution	6.95 Å
ligand	ADP, ATP, MG	enzyme	Hydrolase E.C.3.4.25.1 BRENDA
Gene Ontology	Chain Function Process Component 7, 2, j, 1, k, h, i, 6, n, 3, m, l, 4, 5 K, J, H, I, M, L a, d, E, g, e, B, c, b, D, G, F, C, f, A
Primary reference	Cryo-EM structures of the archaeal PAN-proteasome reveal an around-the-ring ATPase cycle., Majumder P, Rudack T, Beck F, Danev R, Pfeifer G, Nagy I, Baumeister W, Proc Natl Acad Sci U S A. 2018 Dec 17. pii: 1817752116. doi:, 10.1073/pnas.1817752116. PMID:30559193

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1147 Kb) [Save to disk] Biological Unit Coordinates (6hed.pdb1.gz) 1138 Kb LPC: Ligand-Protein Contacts for 6HED CSU: Contacts of Structural Units for 6HED Retrieve 6HED in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 6HED from S2C, [Save to disk]

View 6HED in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 6HED

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [6hed_3] [6hed_h] [6hed_g] [6hed_a] [6hed_J] [6hed_c] [6hed_1] [6hed_6] [6hed_i] [6hed_B] [6hed_H] [6hed_A] [6hed_m] [6hed_f] [6hed_4] [6hed_d] [6hed_C] [6hed_G] [6hed_D] [6hed_5] [6hed_2] [6hed_k] [6hed_b] [6hed_E] [6hed_l] [6hed_K] [6hed_j] [6hed_e] [6hed_I] [6hed_M] [6hed_L] [6hed_7] [6hed_F] [6hed_n] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 6HED

Community annotation for 6HED at PDBWiki (http://pdbwiki.org)

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