6HEL Hydrolase date Aug 20, 2018
title Structure Of Human Usp25
authors M.Gersch, D.Komander
compound source
Molecule: Ubiquitin Carboxyl-Terminal Hydrolase 25
Chain: A, B
Synonym: Deubiquitinating Enzyme 25,Usp On Chromosome 21,Ub Thioesterase 25,Ubiquitin-Specific-Processing Protease 25;
Ec: 3.4.19.12
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Usp25, Usp21
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_variant: Rosetta2 Placi
symmetry Space Group: I 4
R_factor 0.254 R_Free 0.278
crystal
cell
length a length b length c angle alpha angle beta angle gamma
139.184 139.184 190.470 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.94 Å
ligand
enzyme Hydrolase E.C.3.4.19.12 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceDistinct USP25 and USP28 Oligomerization States Regulate Deubiquitinating Activity., Gersch M, Wagstaff JL, Toms AV, Graves B, Freund SMV, Komander D, Mol Cell. 2019 Mar 21. pii: S1097-2765(19)30141-8. doi:, 10.1016/j.molcel.2019.02.030. PMID:30926242
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (150 Kb) [Save to disk]
  • Biological Unit Coordinates (6hel.pdb1.gz) 285 Kb
  • CSU: Contacts of Structural Units for 6HEL
  • Structure Factors (284 Kb)
  • Retrieve 6HEL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6HEL from S2C, [Save to disk]
  • View 6HEL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6HEL
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6hel_B] [6hel_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6HEL
  • Community annotation for 6HEL at PDBWiki (http://pdbwiki.org)

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