6HLL Membrane Protein date Sep 11, 2018
title Crystal Structure Of The Neurokinin 1 Receptor In Complex Wi Small Molecule Antagonist Cp-99,994
authors J.Schoppe, J.Ehrenmann, C.Klenk, P.Rucktooa, M.Schutz, A.S.Dore, A.Pluckthun
compound source
Molecule: Substance-P Receptor,Glga Glycogen Synthase,Subst Receptor;
Chain: A
Synonym: Spr,Nk-1 Receptor,Nk-1r,Tachykinin Receptor 1,Glyc Synthase,Spr,Nk-1 Receptor,Nk-1r,Tachykinin Receptor 1;
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens, Pyrococcus Abyssi Ge5
Organism_common: Human
Organism_taxid: 9606, 272844
Gene: Tacr1, Nk1r, Tac1r, Pab2292
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_cell_line: Sf9
Expression_system_vector_type: Baculovirus
symmetry Space Group: C 2 2 21
R_factor 0.225 R_Free 0.275
crystal
cell
length a length b length c angle alpha angle beta angle gamma
61.996 122.733 286.494 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.27 Å
ligand GBK enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structures of the human neurokinin 1 receptor in complex with clinically used antagonists., Schoppe J, Ehrenmann J, Klenk C, Rucktooa P, Schutz M, Dore AS, Pluckthun A, Nat Commun. 2019 Jan 3;10(1):17. doi: 10.1038/s41467-018-07939-8. PMID:30604743
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (163 Kb) [Save to disk]
  • Biological Unit Coordinates (6hll.pdb1.gz) 158 Kb
  • LPC: Ligand-Protein Contacts for 6HLL
  • CSU: Contacts of Structural Units for 6HLL
  • Structure Factors (750 Kb)
  • Retrieve 6HLL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6HLL from S2C, [Save to disk]
  • View 6HLL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6HLL
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6hll_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6HLL
  • Community annotation for 6HLL at PDBWiki (http://pdbwiki.org)

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