6HOI Signaling Protein date Sep 17, 2018
title Structure Of Beclin1 Lir Motif Bound To Gabarapl1
authors S.Mouilleron, A.B.Birgisdottir, Z.Bhujbal, M.Wirth, E.Sjottem, G. W.Zhang, R.Lee, N.O'Reilly, S.Tooze, T.Lamark, T.Johansen
compound source
Molecule: Gamma-Aminobutyric Acid Receptor-Associated Prote
Chain: A, B
Synonym: Early Estrogen-Regulated Protein,Gaba(A) Receptor- Protein-Like 1,Glandular Epithelial Cell Protein 1,Gec-1;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Gabarapl1, Gec1
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Beclin-1
Chain: F, G
Synonym: Coiled-Coil Myosin-Like Bcl2-Interacting Protein,P Gt197;
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 21 21 21
R_factor 0.145 R_Free 0.166
crystal
cell
length a length b length c angle alpha angle beta angle gamma
31.990 54.000 138.980 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.14 Å
ligand ACT, EDO enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceMembers of the autophagy class III phosphatidylinositol 3-kinase complex I interact with GABARAP and GABARAPL1 via LIR motifs., Birgisdottir AB, Mouilleron S, Bhujabal Z, Wirth M, Sjottem E, Evjen G, Zhang W, Lee R, O'Reilly N, Tooze SA, Lamark T, Johansen T, Autophagy. 2019 Feb 15. doi: 10.1080/15548627.2019.1581009. PMID:30767700
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (99 Kb) [Save to disk]
  • Biological Unit Coordinates (6hoi.pdb1.gz) 48 Kb
  • Biological Unit Coordinates (6hoi.pdb2.gz) 48 Kb
  • LPC: Ligand-Protein Contacts for 6HOI
  • CSU: Contacts of Structural Units for 6HOI
  • Structure Factors (2226 Kb)
  • Retrieve 6HOI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6HOI from S2C, [Save to disk]
  • View 6HOI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6HOI
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6hoi_B] [6hoi_A] [6hoi_F] [6hoi_G]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6HOI
  • Community annotation for 6HOI at PDBWiki (http://pdbwiki.org)

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