6HP8 Hydrolase date Sep 19, 2018
title Crystal Structure Of Dpp8 In Complex With Val-Boropro
authors B.H.Ross, R.Huber
compound source
Molecule: Dipeptidyl Peptidase 8
Chain: A, B, C
Synonym: Dp8,Dipeptidyl Peptidase Iv-Related Protein 1,Dprp Dipeptidyl Peptidase Viii,Dpp Viii,Prolyl Dipeptidase Dpp8;
Ec: 3.4.14.5
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Dpp8, Dprp1, Mstp097, Mstp135, Mstp141
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
symmetry Space Group: C 2 2 21
R_factor 0.203 R_Free 0.228
crystal
cell
length a length b length c angle alpha angle beta angle gamma
163.163 245.317 261.588 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.50 Å
ligand GK2, GOL, NA enzyme Hydrolase E.C.3.4.14.5 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (433 Kb) [Save to disk]
  • Biological Unit Coordinates (6hp8.pdb1.gz) 286 Kb
  • Biological Unit Coordinates (6hp8.pdb2.gz) 287 Kb
  • LPC: Ligand-Protein Contacts for 6HP8
  • CSU: Contacts of Structural Units for 6HP8
  • Structure Factors (1519 Kb)
  • Retrieve 6HP8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6HP8 from S2C, [Save to disk]
    • View 6HP8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6HP8
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6hp8_C] [6hp8_A] [6hp8_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6HP8
  • Community annotation for 6HP8 at PDBWiki (http://pdbwiki.org)

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