6HRZ Dna Binding Protein date Sep 28, 2018
title Ethr2 In Complex With Compound 4 (Bdm72170)
authors R.Wintjens, A.Wohlkonig, A.Tanina
compound source
Molecule: Probable Transcriptional Regulatory Protein
Chain: A, B
Engineered: Yes
 Organism_scientific: Mycobacterium Tuberculosis (Strain Atc H37rv);
Organism_taxid: 83332
Gene: Rv0078
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
symmetry Space Group: C 1 2 1
R_factor 0.208 R_Free 0.229
crystal
cell
length a length b length c angle alpha angle beta angle gamma
109.910 40.720 108.930 90.00 95.67 90.00
method X-Ray Diffractionresolution 1.57 Å
ligand GO2 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceA fragment-based approach towards the discovery of N-substituted tropinones as inhibitors of Mycobacterium tuberculosis transcriptional regulator EthR2., Prevet H, Moune M, Tanina A, Kemmer C, Herledan A, Frita R, Wohlkonig A, Bourotte M, Villemagne B, Leroux F, Gitzinger M, Baulard AR, Deprez B, Wintjens R, Willand N, Flipo M, Eur J Med Chem. 2019 Feb 10;167:426-438. doi: 10.1016/j.ejmech.2019.02.023. PMID:30784877
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (68 Kb) [Save to disk]
  • Biological Unit Coordinates (6hrz.pdb1.gz) 63 Kb
  • LPC: Ligand-Protein Contacts for 6HRZ
  • CSU: Contacts of Structural Units for 6HRZ
  • Structure Factors (1841 Kb)
  • Retrieve 6HRZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6HRZ from S2C, [Save to disk]
    • View 6HRZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6HRZ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6hrz_A] [6hrz_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6HRZ
  • Community annotation for 6HRZ at PDBWiki (http://pdbwiki.org)

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