6HT9 Hydrolase date Oct 03, 2018
title Mouse Fetuin-B In Complex With Crayfish Astacin
authors F.X.Gomis-Ruth, T.Goulas, T.Guevara, A.Cuppari
compound source
Molecule: Astacin
Chain: A, C
Synonym: Crayfish Small Molecule Proteinase
Ec: 3.4.24.21
Other_details: Mature Form Spanning Residues 50-251 Plus A Zinc Ion.;
Organism_scientific: Astacus Astacus
Organism_common: Noble Crayfish
Organism_taxid: 6715

Molecule: Fetuin-B
Chain: B, D
Synonym: Fetuin-Like Protein Irl685
Engineered: Yes

Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
Gene: Fetub
Expression_system: Trichoplusia Ni
Expression_system_taxid: 7111
Expression_system_cell_line: High Five
Expression_system_vector_type: Baculovirus
Expression_system_vector: Pfastbac1
symmetry Space Group: P 21 21 21
R_factor 0.216 R_Free 0.270
crystal
cell
length a length b length c angle alpha angle beta angle gamma
83.400 85.800 168.700 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.10 Å
ligand GOL, NAG, ZN enzyme Hydrolase E.C.3.4.24.21 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, C


D, B


Primary referenceStructure of mammalian plasma fetuin-B and its mechanism of selective metallopeptidase inhibition., Cuppari A, Korschgen H, Fahrenkamp D, Schmitz C, Guevara T, Karmilin K, Kuske M, Olf M, Dietzel E, Yiallouros I, de Sanctis D, Goulas T, Weiskirchen R, Jahnen-Dechent W, Floehr J, Stoecker W, Jovine L, Gomis-Ruth FX, IUCrJ. 2019 Feb 28;6(Pt 2):317-330. doi: 10.1107/S2052252519001568. eCollection, 2019 Mar 1. PMID:30867929
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (347 Kb) [Save to disk]
  • Biological Unit Coordinates (6ht9.pdb1.gz) 174 Kb
  • Biological Unit Coordinates (6ht9.pdb2.gz) 168 Kb
  • LPC: Ligand-Protein Contacts for 6HT9
  • CSU: Contacts of Structural Units for 6HT9
  • Structure Factors (212 Kb)
  • Retrieve 6HT9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6HT9 from S2C, [Save to disk]
  • View 6HT9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6HT9
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6ht9_D] [6ht9_C] [6ht9_B] [6ht9_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6HT9
  • Community annotation for 6HT9 at PDBWiki (http://pdbwiki.org)

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