6HXH Lyase date Oct 17, 2018
title Structure Of The Human Atp Citrate Lyase Holoenzyme In Compl Citrate, Coenzyme A And Mg.Adp
authors K.Verstraete, K.Verschueren
compound source
Molecule: Atp-Citrate Synthase,Human Atp Citrate Lyase
Chain: A, B, C, D, E, F, G, H
Synonym: Atp-Citrate (Pro-S-)-Lyase,Acl,Citrate Cleavage En
Ec: 2.3.3.8
Engineered: Yes
Other_details: To Enable Crystallographic Studies, A Varian Acl Was Produced That Lacked A Flexible Linker Region (Resi 487).,To Enable Crystallographic Studies, A Variant Of Huma Produced That Lacked A Flexible Linker Region (Residues 426
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Acly
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21
Expression_system_variant: De3
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-Duet
symmetry Space Group: P 1
R_factor 0.156 R_Free 0.187
crystal
cell
length a length b length c angle alpha angle beta angle gamma
150.364 154.011 154.087 91.53 110.04 107.46
method X-Ray Diffractionresolution 3.30 Å
ligand
enzyme Transferase E.C.2.3.3.8 BRENDA
Primary referenceStructure of ATP citrate lyase and the origin of citrate synthase in the Krebs cycle., Verschueren KHG, Blanchet C, Felix J, Dansercoer A, De Vos D, Bloch Y, Van Beeumen J, Svergun D, Gutsche I, Savvides SN, Verstraete K, Nature. 2019 Apr 3. pii: 10.1038/s41586-019-1095-5. doi:, 10.1038/s41586-019-1095-5. PMID:30944476
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (2811 Kb) [Save to disk]
  • Biological Unit Coordinates (6hxh.pdb1.gz) 1398 Kb
  • Biological Unit Coordinates (6hxh.pdb2.gz) 1407 Kb
  • CSU: Contacts of Structural Units for 6HXH
  • Structure Factors (11433 Kb)
  • Retrieve 6HXH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6HXH from S2C, [Save to disk]
  • View 6HXH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6HXH
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6hxh from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6hxh_E] [6hxh_D] [6hxh_A] [6hxh_G] [6hxh_C] [6hxh_F] [6hxh_H] [6hxh_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6HXH
  • Community annotation for 6HXH at PDBWiki (http://pdbwiki.org)

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