6HZY Hydrolase date Oct 24, 2018
title Crystal Structure Of A Bacterial Fucosidase With Inhibitor F
authors L.Wu, G.J.Davies, K.A.Stubbs, T.Coyle, A.W.Debowski
compound source
Molecule: Alpha-L-Fucosidase
Chain: A, B
Engineered: Yes
Organism_scientific: Bacteroides Thetaiotaomicron Vpi-5482
Organism_taxid: 226186
Gene: Bt_2970
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: I 1 2 1
R_factor 0.208 R_Free 0.254
crystal
cell
length a length b length c angle alpha angle beta angle gamma
104.925 84.602 121.737 90.00 109.00 90.00
method X-Ray Diffractionresolution 1.70 Å
ligand EDO, GYZ, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceSynthetic and crystallographic insight into exploiting sp2-hybridization in the development of alpha-L-fucosidase inhibitors., Coyle T, Wu L, Debowski A, Davies G, Stubbs KA, Chembiochem. 2019 Jan 21. doi: 10.1002/cbic.201800710. PMID:30663832
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (166 Kb) [Save to disk]
  • Biological Unit Coordinates (6hzy.pdb1.gz) 159 Kb
  • LPC: Ligand-Protein Contacts for 6HZY
  • CSU: Contacts of Structural Units for 6HZY
  • Structure Factors (5219 Kb)
  • Retrieve 6HZY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6HZY from S2C, [Save to disk]
  • View 6HZY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6HZY
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6hzy_B] [6hzy_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6HZY
  • Community annotation for 6HZY at PDBWiki (http://pdbwiki.org)

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