6I07 Immune System date Oct 25, 2018
title Crystal Structure Of Epcam In Complex With Scfv
authors J.B.Casaletto, M.L.Geddie, A.O.Abu-Yousif, K.Masson, A.Fulgham, A T.Maiwald, J.D.Kearns, N.Kohli, S.Su, M.Razlog, A.Raue, A.Kalra, M.Hakansson, D.T.Logan, M.Welin, S.Chattopadhyay, B.D.Harms, U.B B.Schoeberl, A.A.Lugovskoy, G.Macbeath
compound source
Molecule: Single Chain Fv
Chain: A, B
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell_line: Expi293f Cells

Molecule: Epithelial Cell Adhesion Molecule
Chain: C, D
Synonym: Ep-Cam,Adenocarcinoma-Associated Antigen,Cell Surf Glycoprotein Trop-1,Epithelial Cell Surface Antigen,Epithel Glycoprotein,Egp,Epithelial Glycoprotein 314,Hegp314,Ks 14 Ksa,Major Gastrointestinal Tumor-Associated Protein Ga733-2 Associated Calcium Signal Transducer 1;
Engineered: Yes
Other_details: Pca Is Pyroglutamic Acid Post Translational Modification

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Epcam, Ga733-2, M1s2, M4s1, Mic18, Tacstd1, Trop1
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell_line: Expi293f Cells
symmetry Space Group: P 21 21 21
R_factor 0.230 R_Free 0.279
crystal
cell
length a length b length c angle alpha angle beta angle gamma
80.886 91.071 181.445 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.35 Å
Gene
Ontology
ChainFunctionProcessComponent
D, C


Primary referenceMM-131, a bispecific anti-Met/EpCAM mAb, inhibits HGF-dependent and HGF-independent Met signaling through concurrent binding to EpCAM., Casaletto JB, Geddie ML, Abu-Yousif AO, Masson K, Fulgham A, Boudot A, Maiwald T, Kearns JD, Kohli N, Su S, Razlog M, Raue A, Kalra A, Hakansson M, Logan DT, Welin M, Chattopadhyay S, Harms BD, Nielsen UB, Schoeberl B, Lugovskoy AA, MacBeath G, Proc Natl Acad Sci U S A. 2019 Mar 21. pii: 1819085116. doi:, 10.1073/pnas.1819085116. PMID:30898885
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (155 Kb) [Save to disk]
  • Biological Unit Coordinates (6i07.pdb1.gz) 149 Kb
  • CSU: Contacts of Structural Units for 6I07
  • Structure Factors (1592 Kb)
  • Retrieve 6I07 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6I07 from S2C, [Save to disk]
  • View 6I07 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6I07
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6i07 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6i07_C] [6i07_B] [6i07_A] [6i07_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6I07
  • Community annotation for 6I07 at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science