6I3N Signaling Protein date Nov 06, 2018
title Helical Myd88 Death Domain Filament
authors M.C.Moncrieffe, D.Bollschweiler, P.A.P.Penczek, N.J.Gay
compound source
Molecule: Myeloid Differentiation Primary Response Protein
Chain: M, I, J, K, H, L, B, F, C, D, A, E, G
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Myd88
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 3.10 Å
Gene
Ontology
ChainFunctionProcessComponent
F, A, J, K, E, B, H, M, C, D, I, G, L


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (197 Kb) [Save to disk]
  • Biological Unit Coordinates (6i3n.pdb1.gz) 191 Kb
  • CSU: Contacts of Structural Units for 6I3N
  • Retrieve 6I3N in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6I3N from S2C, [Save to disk]
  • View 6I3N in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6I3N
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6i3n from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6i3n_D] [6i3n_J] [6i3n_A] [6i3n_B] [6i3n_H] [6i3n_F] [6i3n_I] [6i3n_L] [6i3n_G] [6i3n_C] [6i3n_M] [6i3n_K] [6i3n_E]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6I3N
  • Community annotation for 6I3N at PDBWiki (http://pdbwiki.org)

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