6I3V	Lipid Binding Protein	date	Nov 07, 2018
title	X-Ray Structure Of The Human Mitochondrial Prelid1 In Comple Triap1
authors	J.L.Berry, X.Miliara, R.M.L.Morgan, S.J.Matthews
compound		source
Molecule: Preli Domain-Containing Protein 1, Mitochondrial Chain: F, B Synonym: 25 Kda Protein Of Relevant Evolutionary And Lympho Interest,Px19-Like Protein; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Prelid1, Preli, Cgi-106, Sbbi12 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Tp53-Regulated Inhibitor Of Apoptosis 1 Chain: A, C Synonym: Protein 15e1.1,Wf-1,P53-Inducible Cell-Survival Fa P53csv; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Triap1, 15e1.1, Hspc132 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 63 2 2	R_factor 0.205 R_Free 0.245
crystal cell	length a length b length c angle alpha angle beta angle gamma 127.312 127.312 177.390 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	1.98 Å
ligand	CL, MYR, NA	enzyme
Gene Ontology	Chain Function Process Component F, B
Primary reference	Structural determinants of lipid specificity within Ups/PRELI lipid transfer proteins., Miliara X, Tatsuta T, Berry JL, Rouse SL, Solak K, Chorev DS, Wu D, Robinson CV, Matthews S, Langer T, Nat Commun. 2019 Mar 8;10(1):1130. doi: 10.1038/s41467-019-09089-x. PMID:30850607

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (185 Kb) [Save to disk] Biological Unit Coordinates (6i3v.pdb1.gz) 175 Kb LPC: Ligand-Protein Contacts for 6I3V CSU: Contacts of Structural Units for 6I3V Structure Factors (2332 Kb) Retrieve 6I3V in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 6I3V from S2C, [Save to disk]

View 6I3V in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 6I3V

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [6i3v_B] [6i3v_A] [6i3v_F] [6i3v_C] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 6I3V

Community annotation for 6I3V at PDBWiki (http://pdbwiki.org)

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---