6I5E Hydrolase date Nov 13, 2018
title X-Ray Structure Of Apo Human Soluble Epoxide Hydrolase C-Ter Domain (Hseh Ctd)
authors G.Abis, J.Kopec, W.W.Yue, M.R.Conte
compound source
Molecule: Bifunctional Epoxide Hydrolase 2
Chain: A, B
Ec: 3.3.2.10,3.1.3.76
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ephx2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: I 1 2 1
R_factor 0.246 R_Free 0.277
crystal
cell
length a length b length c angle alpha angle beta angle gamma
88.224 80.139 104.696 90.00 95.39 90.00
method X-Ray Diffractionresolution 2.60 Å
ligand
enzyme Hydrolase E.C.3.3.2.10 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary reference15-deoxy-Delta(12,14)-Prostaglandin J2 inhibits human soluble epoxide hydrolase by a dual orthosteric and allosteric mechanism., Abis G, Charles RL, Kopec J, Yue WW, Atkinson RA, Bui TTT, Lynham S, Popova S, Sun YB, Fraternali F, Eaton P, Conte MR, Commun Biol. 2019 May 17;2:188. doi: 10.1038/s42003-019-0426-2. eCollection 2019. PMID:31123712
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (106 Kb) [Save to disk]
  • Biological Unit Coordinates (6i5e.pdb1.gz) 101 Kb
  • CSU: Contacts of Structural Units for 6I5E
  • Structure Factors (919 Kb)
  • Retrieve 6I5E in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6I5E from S2C, [Save to disk]
  • View 6I5E in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6I5E
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6i5e_A] [6i5e_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6I5E
  • Community annotation for 6I5E at PDBWiki (http://pdbwiki.org)

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