6I5M Translation date Nov 13, 2018
title Gamma Subunit Of The Translation Initiation Factor 2 From Su Solfataricus In Complex With Gdp And Formate Ion
authors O.Kravchenko, O.Nikonov, A.Gabdulkhakov, E.Stolboushkina, V.Arkh M.Garber, S.Nikonov
compound source
Molecule: Translation Initiation Factor 2 Subunit Gamma
Chain: A
Synonym: Aif2-Gamma,Eif-2-Gamma
Engineered: Yes
 Organism_scientific: Sulfolobus Solfataricus
Organism_taxid: 2287
Gene: Eif2g, Sso0412
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: H 3 2
R_factor 0.173 R_Free 0.224
crystal
cell
length a length b length c angle alpha angle beta angle gamma
142.143 142.143 218.587 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.40 Å
ligand FMT, GDP, MG, NA enzyme
Gene
Ontology
ChainFunctionProcessComponent
A
  • translation elongation facto...


    • Primary referenceThe third structural switch in the archaeal translation initiation factor 2 (aIF2) molecule and its possible role in the initiation of GTP hydrolysis and the removal of aIF2 from the ribosome., Nikonov O, Kravchenko O, Nevskaya N, Stolboushkina E, Garber M, Nikonov S, Acta Crystallogr D Struct Biol. 2019 Apr 1;75(Pt 4):392-399. doi:, 10.1107/S2059798319002304. Epub 2019 Mar 28. PMID:30988256
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (82 Kb) [Save to disk]
  • Biological Unit Coordinates (6i5m.pdb1.gz) 76 Kb
  • LPC: Ligand-Protein Contacts for 6I5M
  • CSU: Contacts of Structural Units for 6I5M
  • Structure Factors (578 Kb)
  • Retrieve 6I5M in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6I5M from S2C, [Save to disk]
    • View 6I5M in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6I5M
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6i5m_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6I5M
  • Community annotation for 6I5M at PDBWiki (http://pdbwiki.org)

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