6I5N Signaling Protein date Nov 14, 2018
title Crystal Structure Of Socs2:Elongin C:Elongin B In Complex Wi Hormone Receptor Peptide
authors W.W.Kung, S.Ramachandran, N.Makukhin, E.Bruno, A.Ciulli
compound source
Molecule: Suppressor Of Cytokine Signaling 2
Chain: A, D
Synonym: Socs-2,Cytokine-Inducible Sh2 Protein 2,Cis-2,Stat Stat Inhibitor 2,Ssi-2;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Socs2, Cis2, Ssi2, Stati2
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008

Molecule: Elongin-B
Chain: B, E
Synonym: Elob,Elongin 18 Kda Subunit,Rna Polymerase II Tran Factor Siii Subunit B,Siii P18,Transcription Elongation Fac Polypeptide 2;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Elob, Tceb2
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008

Molecule: Elongin-C
Chain: C, F
Synonym: Eloc,Elongin 15 Kda Subunit,Rna Polymerase II Tran Factor Siii Subunit C,Siii P15,Transcription Elongation Fac Polypeptide 1;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Eloc, Tceb1
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008

Molecule: Growth Hormone Receptor Peptide
Chain: J, K, I, L
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 21 21 2
R_factor 0.190 R_Free 0.226
crystal
cell
length a length b length c angle alpha angle beta angle gamma
113.177 156.763 57.571 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.98 Å
Gene
Ontology
ChainFunctionProcessComponent
A, D


E, B


F, C


Primary referenceStructural insights into substrate recognition by the SOCS2 E3 ubiquitin ligase., Kung WW, Ramachandran S, Makukhin N, Bruno E, Ciulli A, Nat Commun. 2019 Jun 10;10(1):2534. doi: 10.1038/s41467-019-10190-4. PMID:31182716
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (273 Kb) [Save to disk]
  • Biological Unit Coordinates (6i5n.pdb1.gz) 133 Kb
  • Biological Unit Coordinates (6i5n.pdb2.gz) 129 Kb
  • CSU: Contacts of Structural Units for 6I5N
  • Structure Factors (2547 Kb)
  • Retrieve 6I5N in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6I5N from S2C, [Save to disk]
  • View 6I5N in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6I5N
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6i5n from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6i5n_I] [6i5n_D] [6i5n_C] [6i5n_B] [6i5n_J] [6i5n_A] [6i5n_L] [6i5n_K] [6i5n_E] [6i5n_F]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6I5N
  • Community annotation for 6I5N at PDBWiki (http://pdbwiki.org)

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