6I80 Transcription date Nov 19, 2018
title Crystal Structure Of The Second Bromodomain Of Brd2 In Compl Rt53
authors S.Picaud, R.Traquete, G.J.L.Bernardes, J.Newman, C.H.Arrowsmith, A.M.Edwards, C.Bountra, P.Filippakopoulos, Structural Genomics Consortium (Sgc)
compound source
Molecule: Bromodomain-Containing Protein 2
Chain: A, B
Synonym: O27.1.1,Really Interesting New Gene 3 Protein
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Brd2, Kiaa9001, Ring3
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_variant: R3
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pnic28-Bsa4
symmetry Space Group: C 2 2 21
R_factor 0.131 R_Free 0.143
crystal
cell
length a length b length c angle alpha angle beta angle gamma
64.409 66.720 129.613 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.14 Å
ligand EDO, H7B enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (95 Kb) [Save to disk]
  • Biological Unit Coordinates (6i80.pdb1.gz) 46 Kb
  • Biological Unit Coordinates (6i80.pdb2.gz) 47 Kb
  • LPC: Ligand-Protein Contacts for 6I80
  • CSU: Contacts of Structural Units for 6I80
  • Structure Factors (4174 Kb)
  • Retrieve 6I80 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6I80 from S2C, [Save to disk]
    • View 6I80 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6I80
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6i80_B] [6i80_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6I80
  • Community annotation for 6I80 at PDBWiki (http://pdbwiki.org)

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