6I8A Dna Binding Protein date Nov 19, 2018
title The Crystal Structure Of The Pol2 Catalytic Domain Of Dna Po Epsilon Carrying A P301r Substitution.
authors V.Parkash, E.Johansson
compound source
Molecule: Dna Polymerase Epsilon Catalytic Subunit A
Chain: A, B
Synonym: Dna Polymerase II Subunit A
Ec: 2.7.7.7
Engineered: Yes
Mutation: Yes
 Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c
Gene: Pol2, Dun2, Ynl262w, N0825
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008

Molecule: Primer Dna
Chain: P, C
Engineered: Yes
Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: Template Dna
Chain: T, D
Engineered: Yes
Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
symmetry Space Group: P 1 2 1
R_factor 0.229 R_Free 0.279
crystal
cell
length a length b length c angle alpha angle beta angle gamma
154.466 70.257 159.335 90.00 112.85 90.00
method X-Ray Diffractionresolution 2.65 Å
ligand CA, DOC, DTP, FE enzyme Transferase E.C.2.7.7.7 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (369 Kb) [Save to disk]
  • Biological Unit Coordinates (6i8a.pdb1.gz) 185 Kb
  • Biological Unit Coordinates (6i8a.pdb2.gz) 181 Kb
  • LPC: Ligand-Protein Contacts for 6I8A
  • CSU: Contacts of Structural Units for 6I8A
  • Structure Factors (3284 Kb)
  • Retrieve 6I8A in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6I8A from S2C, [Save to disk]
    • View 6I8A in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6I8A
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6i8a_A] [6i8a_P] [6i8a_C] [6i8a_D] [6i8a_B] [6i8a_T]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6I8A
  • Community annotation for 6I8A at PDBWiki (http://pdbwiki.org)

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