6IAM Transferase date Nov 27, 2018
title Modulating Protein-Protein Interactions With Visible Light P Backbone Switches
authors L.Werel, L.O.Essen
compound source
Molecule: Wd Repeat-Containing Protein 5
Chain: A
Synonym: Bmp2-Induced 3-Kb Gene Protein
Engineered: Yes
Other_details: First 28 Amino Acids Were Removed
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Wdr5, Big3
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008

Molecule: Ser-Ala-Arg-Ala-Xy5-Val-His-Leu-Arg-Lys-Ser-Ala
Chain: B
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Small Ubiquitin-Related Modifier 5
Chain: C
Fragment: Unp Residues 5-8
Synonym: Sumo-5,Sumo1 Pseudogene 1,Ubiquitin-Like 2,Ubiquit
Engineered: Yes
Other_details: Residual Peptide From Sumo-Tag, That Was Cle Before Crystalliisation

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Sumo1p1, Sumo5, Ubl2, Ubl6
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
symmetry Space Group: P 1 21 1
R_factor 0.148 R_Free 0.170
crystal
cell
length a length b length c angle alpha angle beta angle gamma
46.526 46.560 66.168 90.00 107.22 90.00
method X-Ray Diffractionresolution 1.51 Å
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceModulating Protein-Protein Interactions with Visible-Light-Responsive Peptide Backbone Photoswitches., Albert L, Penalver A, Djokovic N, Werel L, Hoffarth M, Ruzic D, Xu J, Essen LO, Nikolic K, Dou Y, Vazquez O, Chembiochem. 2019 Jun 3;20(11):1417-1429. doi: 10.1002/cbic.201800737. Epub 2019 , Apr 25. PMID:30675988
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (163 Kb) [Save to disk]
  • Biological Unit Coordinates (6iam.pdb1.gz) 158 Kb
  • CSU: Contacts of Structural Units for 6IAM
  • Structure Factors (1666 Kb)
  • Retrieve 6IAM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6IAM from S2C, [Save to disk]
  • View 6IAM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6IAM
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6iam from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6iam_A] [6iam_B] [6iam_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6IAM
  • Community annotation for 6IAM at PDBWiki (http://pdbwiki.org)

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