6ID1 | Splicing | date | Sep 07, 2018 |
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title | Cryo-Em Structure Of A Human Intron Lariat Spliceosome After Loaded (Ils2 Complex) At 2.9 Angstrom Resolution | ||||||||||||||
authors | X.Zhang, X.Zhan, C.Yan, Y.Shi | ||||||||||||||
compound | source | ||||||||||||||
Molecule: Pre-Mrna-Processing-Splicing Factor 8 Chain: A Synonym: 220 Kda U5 Snrnp-Specific Protein,Prp8 Homolog,Spl Factor Prp8,P220; |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 | ||||||||||||||
Molecule: U5snrna Chain: B |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 | ||||||||||||||
Molecule: 116 Kda U5 Small Nuclear Ribonucleoprotein Compon Chain: C Synonym: Elongation Factor Tu Gtp-Binding Domain-Containing 2,Snu114 Homolog,Hsnu114,U5 Snrnp-Specific Protein,116 Kda, Kda; |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 | ||||||||||||||
Molecule: U5 Small Nuclear Ribonucleoprotein 40 Kda Protein Chain: E Synonym: U5-40k,38 Kda-Splicing Factor,Prp8-Binding Protein U5 Snrnp-Specific 40 Kda Protein,Wd Repeat-Containing Prote |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 | ||||||||||||||
Molecule: U6snrna Chain: F |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 | ||||||||||||||
Molecule: Crooked Neck-Like Protein 1 Chain: J Synonym: Crooked Neck Homolog,Hcrn |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 | ||||||||||||||
Molecule: Cell Division Cycle 5-Like Protein Chain: L Synonym: Cdc5-Like Protein,Pombe Cdc5-Related Protein |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 | ||||||||||||||
Molecule: Pre-Mrna-Splicing Factor Syf2 Chain: M Synonym: Ccndbp1-Interactor,P29 |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 | ||||||||||||||
Molecule: Protein Bud31 Homolog Chain: N Synonym: Protein Edg-2,Protein G10 Homolog |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 | ||||||||||||||
Molecule: Pre-Mrna-Splicing Factor Rbm22 Chain: O Synonym: Rna-Binding Motif Protein 22,Zinc Finger Ccch Doma Containing Protein 16; |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 | ||||||||||||||
Molecule: Spliceosome-Associated Protein Cwc15 Homolog Chain: P |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 | ||||||||||||||
Molecule: Snw Domain-Containing Protein 1 Chain: R Synonym: Nuclear Protein Skip,Nuclear Receptor Coactivator Ski-Interacting Protein; |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 | ||||||||||||||
Molecule: Peptidyl-Prolyl Cis-Trans Isomerase-Like 1 Chain: S Synonym: Ppiase,Rotamase Ppil1 Ec: 5.2.1.8 |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 | ||||||||||||||
Molecule: Pleiotropic Regulator 1 Chain: T |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 | ||||||||||||||
Molecule: Pre-Mrna-Processing Factor 17 Chain: W Synonym: Cell Division Cycle 40 Homolog,Eh-Binding Protein Prp17 Homolog,Hprp17; |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 | ||||||||||||||
Molecule: Pre-Mrna Chain: G |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 | ||||||||||||||
Molecule: U2snrna Chain: H |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 | ||||||||||||||
Molecule: Cwf19-Like Protein 2 Chain: U |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 | ||||||||||||||
Molecule: Small Nuclear Ribonucleoprotein Sm D3 Chain: a, h Synonym: Sm-D3,Snrnp Core Protein D3 |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 | ||||||||||||||
Molecule: Small Nuclear Ribonucleoprotein-Associated Protei Chain: b, I |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 | ||||||||||||||
Molecule: Small Nuclear Ribonucleoprotein Sm D1 Chain: c, j Synonym: Sm-D1,Sm-D Autoantigen,Snrnp Core Protein D1 |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 | ||||||||||||||
Molecule: Small Nuclear Ribonucleoprotein Sm D2 Chain: d, k Synonym: Sm-D2,Snrnp Core Protein D2 |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 | ||||||||||||||
Molecule: Small Nuclear Ribonucleoprotein F Chain: f, m Synonym: Snrnp-F,Sm Protein F,Smf |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 | ||||||||||||||
Molecule: Small Nuclear Ribonucleoprotein E Chain: e, l Synonym: Snrnp-E,Sm Protein E,Sme |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 | ||||||||||||||
Molecule: Small Nuclear Ribonucleoprotein G Chain: g, n Synonym: Snrnp-G,Sm Protein G,Smg |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 | ||||||||||||||
Molecule: Pre-Mrna-Processing Factor 19 Chain: q, r, s, t Synonym: Nuclear Matrix Protein 200,Prp19pso4 Homolog,Hpso Type E3 Ubiquitin Transferase Prp19,Senescence Evasion Fact Ec: 2.3.2.27 |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 | ||||||||||||||
Molecule: Pre-Mrna-Splicing Factor Spf27 Chain: K Synonym: Breast Carcinoma-Amplified Sequence 2,Dna Amplifie Mammary Carcinoma 1 Protein,Spliceosome-Associated Protein |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 | ||||||||||||||
Molecule: Pre-Mrna-Splicing Factor Syf1 Chain: I Synonym: Protein Hcnp,Xpa-Binding Protein 2 |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 | ||||||||||||||
Molecule: Rna Helicase Aquarius Chain: Q Synonym: Intron-Binding Protein Of 160 Kda,Ibp160 Ec: 3.6.4.13 |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 | ||||||||||||||
Molecule: Peptidyl-Prolyl Cis-Trans Isomerase E Chain: y Synonym: Ppiase E,Cyclophilin E,Cyclophilin-33,Rotamase E Ec: 5.2.1.8 |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 | ||||||||||||||
Molecule: U2 Small Nuclear Ribonucleoprotein A' Chain: o Synonym: U2 Snrnp A' |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 | ||||||||||||||
Molecule: U2 Small Nuclear Ribonucleoprotein B'' Chain: p Synonym: U2 Snrnp B'' |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 | ||||||||||||||
Molecule: Pre-Mrna-Splicing Factor Atp-Dependent Rna Helica Chain: V Synonym: Atp-Dependent Rna Helicase #46,Deah Box Protein 15 Ec: 3.6.4.13 |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 | ||||||||||||||
symmetry | Space Group: P 1 |
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crystal cell |
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method | Electron Microscopy | resolution | 2.86 Å | ||||||||||||
ligand | GTP, IHP, MG, SEP, ZN | enzyme | Isomerase E.C.5.2.1.8 BRENDA | ||||||||||||
Gene Ontology | |||||||||||||||
Primary reference | Structures of the human spliceosomes before and after release of the ligated exon., Zhang X, Zhan X, Yan C, Zhang W, Liu D, Lei J, Shi Y, Cell Res. 2019 Feb 6. pii: 10.1038/s41422-019-0143-x. doi:, 10.1038/s41422-019-0143-x. PMID:30728453 |
Data retrieval |
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Visual 3D analysis of 6ID1 |
Structure-derived information |
Sequence-derived information |
Other resources with information on 6ID1 |
OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science |