6IDO Transcription date Sep 10, 2018
title Crystal Structure Of Klebsiella Pneumoniae Sigma4 Of Sigmas With The Rna Polymerase Beta-Flap-Tip-Helix In Complex With Element Dna
authors Y.C.Lou, C.Y.Chien, C.Chen, C.H.Hsu
compound source
Molecule: Rna Polymerase Sigma Factor Rpos,Rna Polymerase B Tip-Helix;
Chain: A, B
Synonym: Sigma S,Sigma S
Engineered: Yes
Mutation: Yes
 Organism_scientific: Escherichia Coli, Klebsiella Pneumonia
Organism_taxid: 562, 573
Gene: Rpos
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)

Molecule: Dna (5'-D(Pgpaptptptpgptpcpapapgptpg 3');
Chain: C, E
Engineered: Yes
Synthetic: Yes
Organism_scientific: Klebsiella Pneumoniae
Organism_taxid: 573

Molecule: Dna (5'-D(Pcpcpapcptptpgpapcpapapapt 3');
Chain: D, F
Engineered: Yes
Synthetic: Yes
Organism_scientific: Klebsiella Pneumoniae
Organism_taxid: 573
symmetry Space Group: I 4 2 2
R_factor 0.223 R_Free 0.253
crystal
cell
length a length b length c angle alpha angle beta angle gamma
154.540 154.540 144.960 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.75 Å
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (111 Kb) [Save to disk]
  • Biological Unit Coordinates (6ido.pdb1.gz) 54 Kb
  • Biological Unit Coordinates (6ido.pdb2.gz) 52 Kb
  • CSU: Contacts of Structural Units for 6IDO
  • Structure Factors (90 Kb)
  • Retrieve 6IDO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6IDO from S2C, [Save to disk]
    • View 6IDO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6IDO
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6ido_E] [6ido_B] [6ido_D] [6ido_C] [6ido_A] [6ido_F]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6IDO
  • Community annotation for 6IDO at PDBWiki (http://pdbwiki.org)

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